View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16471_high_12 (Length: 525)
Name: NF16471_high_12
Description: NF16471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16471_high_12 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 70 - 525
Target Start/End: Complemental strand, 54791988 - 54791533
Alignment:
| Q |
70 |
gtacctcctcacgggctttacgctgcatactccttgactctaataatnnnnnnnnnnnnnnnnngtgagacagacatttttgtagcattaaaacctataa |
169 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
54791988 |
gtacctcctcacgggctttacgctgcatactccttgactctaataataaaataaaaataaaaaagtgagacagacatttttgtagcattaaaacctataa |
54791889 |
T |
|
| Q |
170 |
gnnnnnnnctactcttctgcttcaatgatcgtacaagaatagnnnnnnntacatggccaaacatgaagcacacagcctttacatacaataaggcaaaatc |
269 |
Q |
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| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791888 |
gtttttttctactcttctgcttcaatgatcatacaagaatagaaaaaaatacatggccaaacatgaagcacacagcctttacatacaataaggcaaaatc |
54791789 |
T |
|
| Q |
270 |
agattctaacagacattatacaaaccttcaacaaaagcattgtgaagcctgtctttctcctccagcatcctacttaaggacatggtcttctcattatact |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791788 |
agattctaacagacattatacaaaccttcaacaaaagcattgtgaagcctgtctttctcctccagcatcctacttaaggacatggtcttctcattatact |
54791689 |
T |
|
| Q |
370 |
tatactgcattttgttgaggttttcatttgtaatgtcaatttcattggccaggttttccacaatgctatttctgctttcagatgcttcttgaacaatatc |
469 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791688 |
tatactgcattttgttgaggttttcatttgtaatgtcaatttcattggccaggttttccacaatgctatttctgctttcagatgcttcttgaacaatatc |
54791589 |
T |
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| Q |
470 |
tgaaattgttctcagccttcctttgttccgaaggtactccccgattggccctccac |
525 |
Q |
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| T |
54791588 |
tgaaactgttctcagccttcctttgttccgaaggtactccccgattggccctccac |
54791533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 74 - 525
Target Start/End: Original strand, 54777160 - 54777613
Alignment:
| Q |
74 |
ctcctcacgggctttacgctgcatactccttgactctaataatnnnnnnnnnnnnnnnnngtgagacagacatttttgtagcattaaaacctat--aagn |
171 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
54777160 |
ctcctcacgggctttacgctgcatactccttgactctaataataaaataaaaataaaaaagtgagacagacatttttgtagcattaaaacctatgcaagt |
54777259 |
T |
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| Q |
172 |
nnnnnnctactcttctgcttcaatgatcgtacaagaatagnnnnnnntacatggccaaacatgaagcacacagcctttacatacaataaggcaaaatcag |
271 |
Q |
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|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54777260 |
ttttttctactcttctgcctcaatgatcgtacaagaatagaaaaacatacatggccaaacatgaagcacacagcctttacatacaataaggcaaaatcag |
54777359 |
T |
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| Q |
272 |
attctaacagacattatacaaaccttcaacaaaagcattgtgaagcctgtctttctcctccagcatcctacttaaggacatggtcttctcattatactta |
371 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54777360 |
attctaacagacattatacaaaccttcaacaaaagcattgtgaagcctgtcattctcctccagcatcctacttaaggacatggtcttctcattatactta |
54777459 |
T |
|
| Q |
372 |
tactgcattttgttgaggttttcatttgtaatgtcaatttcattggccaggttttccacaatgctatttctgctttcagatgcttcttgaacaatatctg |
471 |
Q |
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||| | ||| |||||||||||||||||| ||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||| | |
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| T |
54777460 |
taccgaattatgttgaggttttcatttggaatgtcaatttcattggtcaggttttcccgtttgctattttctctttcagatgcttcttgaacaatatccg |
54777559 |
T |
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| Q |
472 |
aaattgttctcagccttcctttgttccgaaggtactccccgattggccctccac |
525 |
Q |
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| T |
54777560 |
aaattgttctcagccttcctttgttccgagggtactccccgattggccctccac |
54777613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 178 - 525
Target Start/End: Complemental strand, 52284538 - 52284191
Alignment:
| Q |
178 |
ctactcttctgcttcaatgatcgtacaagaatagnnnnnnntacatggccaaacatgaagcacacagcctttacatacaataaggcaaaatcagattcta |
277 |
Q |
| |
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||||||| |||||||||||| |||||||||||| ||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
52284538 |
ctactctactgcttcaatgaacgtacaagaatataaaaacatacatggccaaacttgaagcacacggcctttacatacaataagacaaaatcagattcta |
52284439 |
T |
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| Q |
278 |
acagacattatacaaaccttcaacaaaagcattgtgaagcctgtctttctcctccagcatcctacttaaggacatggtcttctcattatacttatactgc |
377 |
Q |
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| T |
52284438 |
acagaaattatacaaaccttcaacaaaagcattgtgaagcctgtctttctcctccagcatcctacttaaagacatggtcttctcgttatacttatattgc |
52284339 |
T |
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| Q |
378 |
attttgttgaggttttcatttgtaatgtcaatttcattggccaggttttccacaatgctatttctgctttcagatgcttcttgaacaatatctgaaattg |
477 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52284338 |
attttgttgaggttttcatttgtaatatcaatttcattagccaggttttccacaatgctatttctgctttcagatgcttcttgaacaatatctgaaattg |
52284239 |
T |
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| Q |
478 |
ttctcagccttcctttgttccgaaggtactccccgattggccctccac |
525 |
Q |
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| T |
52284238 |
ttctcagccttcctttgttccgaaggtactccccgattggccctccac |
52284191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 252 - 511
Target Start/End: Complemental strand, 799734 - 799475
Alignment:
| Q |
252 |
atacaataaggcaaaatcagattctaacagacattatacaaaccttcaacaaaagcattgtgaagcctgtctttctcctccagcatcctacttaaggaca |
351 |
Q |
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||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
799734 |
atacaataaggcaaaatcagattataacagaaattatacaaaccttcaacaaaagcactgtgaagtttgtctttctcctccagcatcctactcaaggaca |
799635 |
T |
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| Q |
352 |
tggtcttctcattatacttatactgcattttgttgaggttttcatttgtaatgtcaatttcattggccaggttttccacaatgctatttctgctttcaga |
451 |
Q |
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| T |
799634 |
tagtcttctcattatacctatactgcatcttgttgagattttcattagtaatatcaatctcatttgccaggttttccacaatgctatttctgctttgaga |
799535 |
T |
|
| Q |
452 |
tgcttcttgaacaatatctgaaattgttctcagccttcctttgttccgaaggtactcccc |
511 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
799534 |
tgcttcttgaactatatctgaaattgtcctcagccttcctttgttgcgaaggtactcccc |
799475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 799836 - 799796
Alignment:
| Q |
70 |
gtacctcctcacgggctttacgctgcatactccttgactct |
110 |
Q |
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||||||| ||||| |||||||||||||| |||||||||||| |
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| T |
799836 |
gtacctcatcacgagctttacgctgcatgctccttgactct |
799796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 52284655 - 52284615
Alignment:
| Q |
70 |
gtacctcctcacgggctttacgctgcatactccttgactct |
110 |
Q |
| |
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||||||| ||||| |||||||||||||| |||||||||||| |
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| T |
52284655 |
gtacctcttcacgagctttacgctgcatgctccttgactct |
52284615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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