View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16471_high_13 (Length: 524)
Name: NF16471_high_13
Description: NF16471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16471_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 18 - 521
Target Start/End: Original strand, 42357518 - 42358019
Alignment:
| Q |
18 |
agaaggtgaagttgaagtgaagattgttgaaggaagaaactatggtaatgttgttggtggtggaggtgatgttttgagaagtcttgaggaagaaattggt |
117 |
Q |
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| T |
42357518 |
agaaggtgaagttgaagtgaagattgttgaaggaagaaactatggtaatgttgttggtggtggaggtgatgttttgagaagtcttgaggaagaaattggt |
42357617 |
T |
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| Q |
118 |
cctgcttctcctcaagagagactcttcttgcaacacaacttctaattttggaggaagcaatgattatgttgcaaagaatatgctattattagtggctacg |
217 |
Q |
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| T |
42357618 |
cctgcttctcctcaagagagactcttcttgcaacacaacttctaattttggaggaagcaatgattatgttgcaaagaatatgatattattagtggctacg |
42357717 |
T |
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| Q |
218 |
ttaattagtgttgaatgtaattttttgtttaactttttctgcatttgagtttgattatgaatgcaaatgtgacattatttagttttgtaattgtattgta |
317 |
Q |
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| T |
42357718 |
ttaattagtgttgaatgtaattttttgtttaactttttctgcatttgagtttgattatgaatgcaaatgtgacattatttagttttgtaattgtattgta |
42357817 |
T |
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| Q |
318 |
tcttctgagagctatggtttagaattagtggagctttcattctttgatgcaactttgatgtaatgttaatgtaactatcatatctcattttattgactgt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42357818 |
tcttctgagagctatggtttagaattagtggagctttcattctttgatgcaactttgatgtaatgttaatgtaactatc--atctcattttattgactgt |
42357915 |
T |
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| Q |
418 |
aaagcttattagctgtgtcaaaatctataacaacatttgtttttgcttcatttttccaactagaaagattgtgaaatggttattttataacctctgaaga |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42357916 |
aaagcttattagctgtgtcaaaatctataacaacatttgtttttgcttcatttttccaactagaaagattgtgaaatggttattttataacctctgaaga |
42358015 |
T |
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| Q |
518 |
aatg |
521 |
Q |
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|||| |
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| T |
42358016 |
aatg |
42358019 |
T |
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