View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16471_high_14 (Length: 512)
Name: NF16471_high_14
Description: NF16471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16471_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 56 - 502
Target Start/End: Original strand, 1405387 - 1405837
Alignment:
| Q |
56 |
gtcacattattgttattgatgttctagtaggattgtttcgaattgaaagagnnnnnnnnnnnnnnnnnncagcgtgctagactgatctattctcaaggaa |
155 |
Q |
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| T |
1405387 |
gtcacattattgttattgatgttctagtaggattgtttagaattgaaagagaaaaagaaaaaaaaaa--cagcgtgctagactgatctattcccaaggaa |
1405484 |
T |
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| Q |
156 |
agcaagaattgttcaaattctttagggtctctttatttttattcgaggggaggtgagaggaggggaggaaagacaaatccctcttaaactaattttagct |
255 |
Q |
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| T |
1405485 |
agcaagaattgttcaaattctttagggtctctttatttttattcgaggggaggtgagaggaggggaggaaagacaaatccctcttaaactaattttagct |
1405584 |
T |
|
| Q |
256 |
ctccttcaaattgtttcattcaatcaaac--------ttacaatccctccgctcccttctcctcctctcccttgaatcaaataagacgattttgttttgg |
347 |
Q |
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| T |
1405585 |
ctccttcaaattgtttcattcaaccaaactcaatttgttacaatccctccgctccc-tctcctcctctcccttgaatcaaataagacgattttgttttgg |
1405683 |
T |
|
| Q |
348 |
ttagataaaaggatagaagggggcccctctgtgaggagtgttcctccgttgaagactcgtataaatggaacccaaatgaaaagtttatggtttggtctaa |
447 |
Q |
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| T |
1405684 |
ttagataaaaggatagaaggggg-ccctctgtggggagtgttcccctgttgaagactcgtggagatggaacccaaatgaaaagtttatggtttggtctaa |
1405782 |
T |
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| Q |
448 |
atgatcattttgaagatctggnnnnnnngcctgttatagcttcacactttctctg |
502 |
Q |
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| T |
1405783 |
atgatcattttgaagatctggtttttttgcctattataccttcacactttctctg |
1405837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 1404354 - 1404394
Alignment:
| Q |
1 |
gggatattatccagcttttcttagtaatgtagcaaccatga |
41 |
Q |
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| T |
1404354 |
gggataatatccagcttttcttagtaatgtagcaaccatga |
1404394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 45809640 - 45809600
Alignment:
| Q |
1 |
gggatattatccagcttttcttagtaatgtagcaaccatga |
41 |
Q |
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| T |
45809640 |
gggataatacccagcttttcttagtgatgtagcaaccatga |
45809600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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