View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16471_high_15 (Length: 480)

Name: NF16471_high_15
Description: NF16471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16471_high_15
NF16471_high_15
[»] scaffold0330 (2 HSPs)
scaffold0330 (223-401)||(18467-18645)
scaffold0330 (380-423)||(18268-18311)
[»] scaffold0240 (4 HSPs)
scaffold0240 (223-401)||(2485-2663)
scaffold0240 (145-349)||(15374-15587)
scaffold0240 (1-106)||(15590-15697)
scaffold0240 (380-423)||(2286-2329)
[»] chr2 (3 HSPs)
chr2 (1-137)||(33052977-33053113)
chr2 (1-76)||(280406-280481)
chr2 (1-61)||(32162359-32162419)
[»] chr6 (2 HSPs)
chr6 (208-321)||(14341912-14342025)
chr6 (1-87)||(8047773-8047859)
[»] chr4 (2 HSPs)
chr4 (64-137)||(24866484-24866557)
chr4 (4-73)||(10494544-10494613)
[»] scaffold0024 (2 HSPs)
scaffold0024 (1-76)||(144300-144375)
scaffold0024 (1-72)||(145353-145424)
[»] chr7 (1 HSPs)
chr7 (1-61)||(11001257-11001317)
[»] chr1 (2 HSPs)
chr1 (1-76)||(13442032-13442107)
chr1 (1-76)||(40805476-40805551)


Alignment Details
Target: scaffold0330 (Bit Score: 143; Significance: 6e-75; HSPs: 2)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 223 - 401
Target Start/End: Complemental strand, 18645 - 18467
Alignment:
Q  223 tgtgtgatagcctccaaattctcctccttttctattgcctcctctattttggttgccaagttatagtcctttttagtaactaaactcgttattttccctt 322  Q
    ||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  18645 tgtgtgatagcctccaaattctcattcttttttattgcctcctctattttggttgccaagctatagtcctttttagtaactaaacttgttattttccctt 18546  T
Q  323 ttgcatccatacgagcagttttacctctagcggccaggtccgtgcaaactaatgtagggaaatcttcgctgttactttt 401  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||    
T  18545 ttgcatccatacgtgcagttttacctctagcggccaggtccgtgcaaactaatgttgggaaatcttcgttgtttctttt 18467  T

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Target: scaffold0330; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 18311 - 18268
Alignment:
Q  380 ggaaatcttcgctgttacttttgaacttgttgtgattttcaacc 423  Q
    ||||||||||| || ||||||||||||||||| |||||||||||    
T  18311 ggaaatcttcgttgctacttttgaacttgttgagattttcaacc 18268  T

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Target: scaffold0240 (Bit Score: 143; Significance: 6e-75; HSPs: 4)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 223 - 401
Target Start/End: Complemental strand, 2663 - 2485
Alignment:
Q  223 tgtgtgatagcctccaaattctcctccttttctattgcctcctctattttggttgccaagttatagtcctttttagtaactaaactcgttattttccctt 322  Q
    ||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  2663 tgtgtgatagcctccaaattctcattcttttttattgcctcctctattttggttgccaagctatagtcctttttagtaactaaacttgttattttccctt 2564  T
Q  323 ttgcatccatacgagcagttttacctctagcggccaggtccgtgcaaactaatgtagggaaatcttcgctgttactttt 401  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||    
T  2563 ttgcatccatacgtgcagttttacctctagcggccaggtccgtgcaaactaatgttgggaaatcttcgttgtttctttt 2485  T

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Target: scaffold0240; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 145 - 349
Target Start/End: Complemental strand, 15587 - 15374
Alignment:
Q  145 acataagaaatacaagtaacccaataagtgtgaggcattgaatattccagcctagttgcctctattcggacactttcttgtgtgatagcctccaaattct 244  Q
    |||| ||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||    
T  15587 acatgagaaacataagtaacccaataagtgtgaggcattgaatattccaacctagttgcctctattcagatactttcttgtgtgatagcctccaaattct 15488  T
Q  245 cctccttttctattgcctcctctattttggttgccaagttatagtcc-----tttttag----taactaaactcgttattttcccttttgcatccatacg 335  Q
    | |  |||| |||||| ||||||||||||||||||||||||||||||     |||||||    ||| |||||| ||||||||||||||||||||||||||    
T  15487 cgttattttttattgcttcctctattttggttgccaagttatagtcctttaatttttagcaactaattaaacttgttattttcccttttgcatccatacg 15388  T
Q  336 agcagttttacctc 349  Q
     | |||||||||||    
T  15387 tgtagttttacctc 15374  T

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Target: scaffold0240; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 15697 - 15590
Alignment:
Q  1 cattgagtgtaatgcaaagatggttcgctttggaaaatatagcagttgcctttata--ccattaaaggaatgtagtagatgctcttccaccgcgaatatc 98  Q
    |||||| || |||| ||||||||| |||||||||||| ||||||| || | |||||  ||||| |||||||||| |||||||||||||||||||||||||    
T  15697 cattgaatgaaatgaaaagatggtacgctttggaaaacatagcaggtgacattatatgccattgaaggaatgtaatagatgctcttccaccgcgaatatc 15598  T
Q  99 ccacacat 106  Q
    ||||||||    
T  15597 ccacacat 15590  T

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Target: scaffold0240; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 2329 - 2286
Alignment:
Q  380 ggaaatcttcgctgttacttttgaacttgttgtgattttcaacc 423  Q
    ||||||||||| || ||||||||||||||||| |||||||||||    
T  2329 ggaaatcttcgttgctacttttgaacttgttgagattttcaacc 2286  T

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Target: chr2 (Bit Score: 85; Significance: 3e-40; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 33053113 - 33052977
Alignment:
Q  1 cattgagtgtaatgcaaagatggttcgctttggaaaatatagcagttgcctttataccattaaaggaatgtagtagatgctcttccaccgcgaatatccc 100  Q
    ||||||||| |||||||||| |||| ||||| ||||||| ||||||| ||||||| || || ||||||||||||||||||||||||||||||||||||||    
T  33053113 cattgagtggaatgcaaagacggtttgctttcgaaaatacagcagttacctttatgcccttgaaggaatgtagtagatgctcttccaccgcgaatatccc 33053014  T
Q  101 acacatacacgattctatgcctcccaacaccataaat 137  Q
    ||||||||||||| | |||||||| | ||||||||||    
T  33053013 acacatacacgatcccatgcctcctagcaccataaat 33052977  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 280406 - 280481
Alignment:
Q  1 cattgagtgtaatgcaaagatggttcgctttggaaaatatagcagttgcctttataccattaaaggaatgtagtag 76  Q
    ||||||||| |||||| |||||||| | ||||||||||||||||||||| ||||| ||||| ||| ||||||||||    
T  280406 cattgagtgaaatgcatagatggtttgatttggaaaatatagcagttgcttttatgccattgaagaaatgtagtag 280481  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 32162359 - 32162419
Alignment:
Q  1 cattgagtgtaatgcaaagatggttcgctttggaaaatatagcagttgcctttataccatt 61  Q
    ||||||||| ||||  ||||||||| |||||||||||||||| |||||||||||| |||||    
T  32162359 cattgagtgaaatgagaagatggtttgctttggaaaatatagtagttgcctttatgccatt 32162419  T

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Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 208 - 321
Target Start/End: Original strand, 14341912 - 14342025
Alignment:
Q  208 attcggacactttcttgtgtgatagcctccaaattctcctccttttctattgcctcctctattttggttgccaagttatagtcctttttagtaactaaac 307  Q
    |||||||||||||||| ||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||| ||||||||||||||||||| | ||    
T  14341912 attcggacactttcttttgtgatagcctccaaattctcattcttttttattgcctcctctattttggttgccaagctatagtcctttttagtaaccagac 14342011  T
Q  308 tcgttattttccct 321  Q
    | ||||||||||||    
T  14342012 ttgttattttccct 14342025  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 8047773 - 8047859
Alignment:
Q  1 cattgagtgtaatgcaaagatggttcgctttggaaaatatagcagttgcctttataccattaaaggaatgtagtagatgctcttcca 87  Q
    ||||||||  |||| ||||||||||   |||| ||||||||||| || || |||| ||| | ||||||||||| |||||||||||||    
T  8047773 cattgagtaaaatgtaaagatggtttaatttgaaaaatatagcaatttccattatgccagtgaaggaatgtaggagatgctcttcca 8047859  T

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Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 24866557 - 24866484
Alignment:
Q  64 aggaatgtagtagatgctcttccaccgcgaatatcccacacatacacgattctatgcctcccaacaccataaat 137  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||| | |||||||||| ||||||||||    
T  24866557 aggaatgcagtagatgctcttccaccacgaatatcccacacatacacgatcccatgcctcccagcaccataaat 24866484  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 10494613 - 10494544
Alignment:
Q  4 tgagtgtaatgcaaagatggttcgctttggaaaatatagcagttgcctttataccattaaaggaatgtag 73  Q
    |||||| ||||||||||| ||| | |||  ||||||||||||||||| |||| ||||| ||| |||||||    
T  10494613 tgagtgaaatgcaaagatagtttggtttaaaaaatatagcagttgcccttatcccattgaagaaatgtag 10494544  T

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Target: scaffold0024 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 144300 - 144375
Alignment:
Q  1 cattgagtgtaatgcaaagatggttcgctttggaaaatatagcagttgcctttataccattaaaggaatgtagtag 76  Q
    |||||| || ||||||||||||||| | |||| ||||||||| |||||||||||| ||||| ||| ||||||||||    
T  144300 cattgaatgaaatgcaaagatggtttgatttgaaaaatatagtagttgcctttatcccattgaagaaatgtagtag 144375  T

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Target: scaffold0024; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 145424 - 145353
Alignment:
Q  1 cattgagtgtaatgcaaagatggttcgctttggaaaatatagcagttgcctttataccattaaaggaatgta 72  Q
    ||||||||  ||| |||| |||||| | |||| |||||||||||||||||||||| ||||||||| ||||||    
T  145424 cattgagtaaaatacaaatatggtttgatttgaaaaatatagcagttgcctttatcccattaaagaaatgta 145353  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 11001257 - 11001317
Alignment:
Q  1 cattgagtgtaatgcaaagatggttcgctttggaaaatatagcagttgcctttataccatt 61  Q
    ||||||||| |||| |||||||||| | ||||||||||||| ||||||||||||| |||||    
T  11001257 cattgagtgaaatgtaaagatggtttgttttggaaaatataacagttgcctttatgccatt 11001317  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 13442032 - 13442107
Alignment:
Q  1 cattgagtgtaatgcaaagatggttcgctttggaaaatatagcagttgcctttataccattaaaggaatgtagtag 76  Q
    ||||||||| ||||||||||| ||| | |||| |||||| | ||||| ||||||||||||| ||| ||||||||||    
T  13442032 cattgagtgaaatgcaaagatagtttggtttgaaaaataaaacagtttcctttataccattgaagaaatgtagtag 13442107  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 40805551 - 40805476
Alignment:
Q  1 cattgagtgtaatgcaaagatggttcgctttggaaaatatagcagttgcctttataccattaaaggaatgtagtag 76  Q
    |||||| || |||||||||||| || | |||||| ||||||||||||| |||||| ||||| ||| ||||||||||    
T  40805551 cattgaatgaaatgcaaagatgatttgatttggagaatatagcagttgtctttatcccattgaagaaatgtagtag 40805476  T

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