View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16471_high_21 (Length: 436)
Name: NF16471_high_21
Description: NF16471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16471_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 19 - 427
Target Start/End: Original strand, 9738266 - 9738674
Alignment:
| Q |
19 |
gggttttcctaacataattatttataattaacattacataatccttacacatataaatcccctctaaactctctaatttttcatcattcaaatagatact |
118 |
Q |
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| T |
9738266 |
gggttttcctaacataattatttataattaacattacataatccttacacatataaatcccctctaaactctctaatttttcatcattcaaataaatact |
9738365 |
T |
|
| Q |
119 |
aagtactaatctataagacactattcacaaactatgtcttataaggttaatgttgcatttttcctatgtctcaatattattttcttcactatggtgaatt |
218 |
Q |
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| T |
9738366 |
aagtactaatctataagacactattcacaaactatgtcttataaggttaatgttgcatttttcctatgtctcaatattattttcttcactatggtgaatt |
9738465 |
T |
|
| Q |
219 |
gcaactatgtacctgaaatcccagtcccaatcccagacccaatatataacccttctccaaagggtacatgtcctatagatgcacttaagttaggtgtgtg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9738466 |
gcaactatgtacctgaaatcccagtcccaatcccagacccaatatataacccttctccaaagggtacatgtcctatagatgcacttaagttaggtgtgtg |
9738565 |
T |
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| Q |
319 |
tgcaaatttgttgaacttggtcaaagttaaattggggtccccaccaacactcccttgttgctcactcattcaaggtcttgctgatcttgaagctgctgct |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9738566 |
tgcaaatttgttgaacttggtcaaagttaaattggggtccccaccaacactcccttgttgctcactcattcaaggtcttgctgatcttgaagctgctgct |
9738665 |
T |
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| Q |
419 |
tgcctttgc |
427 |
Q |
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| T |
9738666 |
tgcctttgc |
9738674 |
T |
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