View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16471_high_22 (Length: 435)
Name: NF16471_high_22
Description: NF16471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16471_high_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Complemental strand, 4848335 - 4847920
Alignment:
| Q |
18 |
aacctatgaagcacagacacttctcaaattagacgtgtccccgtgtctgtgtctgtgcttgataccatcaactacnnnnnnnataactaaagatagaata |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||| ||||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4848335 |
aacctatgaagcacagacacttctcaaattaaacatgttcccgtgtctatgtctgtgtttgataccatcaactactttttttataactaaagatagaata |
4848236 |
T |
|
| Q |
118 |
aagcaaattttttagttttaacttgttttcattaaatattctgaatagtttatgcaaataagtttgtagattagtgtttaatgagagtagataagctaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4848235 |
aagcaaattttttagttttaacttgttttcattaaatattctgaatagtttatgcaaataagtttgtagattagtgtttaatgagagtagataagctaaa |
4848136 |
T |
|
| Q |
218 |
ataagctattttcttatgaccattttgaattgattgttttagtgatgatgccaacttcatctccaaaactagaagacttccttggtggtgcaactatggg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4848135 |
ataagctattttcttatgaccattttgaattgattgttttagtgatgatgccaacttcatctccaaaactagaagacttccttggtggtgcaactatggg |
4848036 |
T |
|
| Q |
318 |
aactcacaatcatgaatatgaaggacatgaaagagaaacaatggctttgttaagcttggacagcatctactataacaacaatgcagaccatgaaaccaat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4848035 |
aactcacaatcatgaatatgaaggacatgaaagagaaacaatggctttgttaagcttggacagcatctactataacaacaatgcagaccatgaaaccaat |
4847936 |
T |
|
| Q |
418 |
agagaacattcttctc |
433 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
4847935 |
agagaacattcttctc |
4847920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 50
Target Start/End: Original strand, 609414 - 609443
Alignment:
| Q |
21 |
ctatgaagcacagacacttctcaaattaga |
50 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
609414 |
ctatgaagcacagacacttctcaaattaga |
609443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 326 - 432
Target Start/End: Original strand, 19783117 - 19783223
Alignment:
| Q |
326 |
atcatgaatatgaaggacatgaaagagaaacaatggctttgttaagcttggacagcatctactataacaacaatgcagaccatgaaaccaatagagaaca |
425 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||| |||||||| ||| | |||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
19783117 |
atcataaatatgaaggaaatgaaagagaaacaatggctttattaagcttagactgtatctactataacaacaatgcaggacatgaaaccaataaagaaca |
19783216 |
T |
|
| Q |
426 |
ttcttct |
432 |
Q |
| |
|
||||||| |
|
|
| T |
19783217 |
ttcttct |
19783223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 21864927 - 21864884
Alignment:
| Q |
21 |
ctatgaagcacagacacttctcaaattagacgtgtccccgtgtc |
64 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||| ||||| |
|
|
| T |
21864927 |
ctatgaagcacagacactcctcgaattagacgtgtcccggtgtc |
21864884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 20545185 - 20545227
Alignment:
| Q |
22 |
tatgaagcacagacacttctcaaattagacgtgtccccgtgtc |
64 |
Q |
| |
|
||||||||||||||||| ||| ||||| ||||||||||||||| |
|
|
| T |
20545185 |
tatgaagcacagacactcctcgaattaaacgtgtccccgtgtc |
20545227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 326 - 403
Target Start/End: Complemental strand, 32568623 - 32568546
Alignment:
| Q |
326 |
atcatgaatatgaaggacatgaaagagaaacaatggctttgttaagcttggacagcatctactataacaacaatgcag |
403 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||| |||||||| ||| | |||||||||||||||||||||| |
|
|
| T |
32568623 |
atcatgaatataaaggaaatgaaagagaaacaatggctttattaagcttagactgtatctactataacaacaatgcag |
32568546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 317
Target Start/End: Original strand, 47752325 - 47752384
Alignment:
| Q |
258 |
agtgatgatgccaacttcatctccaaaactagaagacttccttggtggtgcaactatggg |
317 |
Q |
| |
|
||||||| ||||| |||||||||| |||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
47752325 |
agtgatggtgccatcttcatctcctaaactagaggactttcttggtggtgcaacaatggg |
47752384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University