View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16471_high_27 (Length: 350)

Name: NF16471_high_27
Description: NF16471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16471_high_27
NF16471_high_27
[»] chr7 (4 HSPs)
chr7 (98-333)||(16644713-16644948)
chr7 (98-333)||(17619074-17619309)
chr7 (12-145)||(16644952-16645085)
chr7 (12-145)||(17619313-17619446)
[»] chr3 (11 HSPs)
chr3 (165-301)||(30201113-30201249)
chr3 (165-301)||(30227288-30227424)
chr3 (165-293)||(30214660-30214787)
chr3 (169-315)||(29648978-29649124)
chr3 (165-315)||(30223037-30223187)
chr3 (166-301)||(36309765-36309899)
chr3 (168-314)||(29856789-29856935)
chr3 (165-315)||(30230278-30230428)
chr3 (244-301)||(30239053-30239110)
chr3 (232-301)||(36333946-36334015)
chr3 (169-300)||(36321276-36321407)
[»] chr5 (1 HSPs)
chr5 (169-287)||(16053601-16053719)
[»] chr6 (2 HSPs)
chr6 (168-293)||(5569436-5569561)
chr6 (168-292)||(5574415-5574539)
[»] chr1 (2 HSPs)
chr1 (204-301)||(16955669-16955766)
chr1 (168-301)||(16966187-16966320)
[»] chr8 (1 HSPs)
chr8 (168-314)||(14934493-14934639)


Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 98 - 333
Target Start/End: Complemental strand, 16644948 - 16644713
Alignment:
Q  98 ttgtttgcacgatggcatcatgttcgagtcaaacaatgaaaaagaaagcaaaaagggatatatcagaggggccaaattggcttgaccttcctagagatat 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  16644948 ttgtttgcacgatggcatcatgttcgagtcaaacaatgaaaaagaaagcaaaaagggagatatcagaggggccaaattggcttgaccttcctagagatat 16644849  T
Q  198 cacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgctctatggtggaacatttgcaaggaacctctcatg 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16644848 cacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgctctatggtggaacatttgcaaggaacctctcatg 16644749  T
Q  298 tggccaacctttcacatgggatacaatgaccgttgt 333  Q
    ||||  ||| ||||||||||||||||||||||||||    
T  16644748 tggcgcaccattcacatgggatacaatgaccgttgt 16644713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 98 - 333
Target Start/End: Complemental strand, 17619309 - 17619074
Alignment:
Q  98 ttgtttgcacgatggcatcatgttcgagtcaaacaatgaaaaagaaagcaaaaagggatatatcagaggggccaaattggcttgaccttcctagagatat 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17619309 ttgtttgcacgatggcatcatgttcgagtcaaacaatgaaaaagaaagcaaaaagggagatatcagaggggccaaattggcttgaccttcctagagatat 17619210  T
Q  198 cacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgctctatggtggaacatttgcaaggaacctctcatg 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17619209 cacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgctctatggtggaacatttgcaaggaacctctcatg 17619110  T
Q  298 tggccaacctttcacatgggatacaatgaccgttgt 333  Q
    ||||  ||| ||||||||||||||||||||||||||    
T  17619109 tggcgcaccattcacatgggatacaatgaccgttgt 17619074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 16645085 - 16644952
Alignment:
Q  12 tcatcaatgtgcttaaagcttgtttcaataaactcagnnnnnnn--attctcagtgctgtttcactttggaagaaatgtttaggtttcttgtttgcacga 109  Q
    |||||||||||||||||||||||||||||||||||||         |||||| |||||||||||||||||||   |||||||||| ||||||||||||||    
T  16645085 tcatcaatgtgcttaaagcttgtttcaataaactcagttttttattattctccgtgctgtttcactttggaa---atgtttaggtgtcttgtttgcacga 16644989  T
Q  110 tggcatcatgttcgagtc-aaacaatgaaaaagaaag 145  Q
    ||||||||||||||||||  |||||||||||||||||    
T  16644988 tggcatcatgttcgagtcgcaacaatgaaaaagaaag 16644952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 17619446 - 17619313
Alignment:
Q  12 tcatcaatgtgcttaaagcttgtttcaataaactcagnnnnnnn--attctcagtgctgtttcactttggaagaaatgtttaggtttcttgtttgcacga 109  Q
    |||||||||||||||||||||||||||||||||||||         |||||| |||||||||||||||||||   |||||||||| ||||||||||||||    
T  17619446 tcatcaatgtgcttaaagcttgtttcaataaactcagttttttattattctccgtgctgtttcactttggaa---atgtttaggtgtcttgtttgcacga 17619350  T
Q  110 tggcatcatgttcgagtc-aaacaatgaaaaagaaag 145  Q
    ||||||||||||||||||  |||||||||||||||||    
T  17619349 tggcatcatgttcgagtcgcaacaatgaaaaagaaag 17619313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 165 - 301
Target Start/End: Original strand, 30201113 - 30201249
Alignment:
Q  165 ggggccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgct 264  Q
    |||||||||||||||||| ||||||| ||| || ||| ||||||||||||||||||||| | |  |||||||||||||||||||||  | ||||||| ||    
T  30201113 ggggccaaattggcttgaacttcctaaagacattacagaaaacattcttcaaaggcttagtaccattgaaattgtgacaagtgcatgtcaagtgtgtcct 30201212  T
Q  265 ctatggtggaacatttgcaaggaacctctcatgtggc 301  Q
    ||||||||||||||||||||||| |||||||||||||    
T  30201213 ctatggtggaacatttgcaaggatcctctcatgtggc 30201249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 165 - 301
Target Start/End: Original strand, 30227288 - 30227424
Alignment:
Q  165 ggggccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgct 264  Q
    |||||||||||||||||| ||||||||||| ||||||  |||||||||||||||||||  | |  | || ||||||||||||||||  | ||||||| ||    
T  30227288 ggggccaaattggcttgaacttcctagagacatcacaacaaacattcttcaaaggcttggtaccatcgagattgtgacaagtgcatgtcaagtgtgtcct 30227387  T
Q  265 ctatggtggaacatttgcaaggaacctctcatgtggc 301  Q
    |||| |||||||||||||||||| |||||||||||||    
T  30227388 ctatagtggaacatttgcaaggatcctctcatgtggc 30227424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 165 - 293
Target Start/End: Original strand, 30214660 - 30214787
Alignment:
Q  165 ggggccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgct 264  Q
    |||||||||||||||||| ||||||||||| ||||||  ||||||| ||||||| |||  | |  |||| ||||||||||||||||  | ||||||| ||    
T  30214660 ggggccaaattggcttgaacttcctagagacatcacaacaaacatt-ttcaaagacttggtaccattgagattgtgacaagtgcatgtcaagtgtgtcct 30214758  T
Q  265 ctatggtggaacatttgcaaggaacctct 293  Q
    ||||||||||||||||||||||| |||||    
T  30214759 ctatggtggaacatttgcaaggatcctct 30214787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 169 - 315
Target Start/End: Original strand, 29648978 - 29649124
Alignment:
Q  169 ccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgctctat 268  Q
    |||||||||||||| ||||| ||||| ||||||   ||||| |||||| |  || || | ||||||||||| |||| ||||| |||||| ||| ||||||    
T  29648978 ccaaattggcttgaacttccaagagacatcacaattaacatccttcaaggagttgatactgttgaaattgtaacaaatgcatgcctagtatgtcctctat 29649077  T
Q  269 ggtggaacatttgcaaggaacctctcatgtggccaacctttcacatg 315  Q
     |||||||||||| ||||| |||||||||||||  ||| ||||||||    
T  29649078 cgtggaacatttgtaaggatcctctcatgtggcgtaccattcacatg 29649124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 165 - 315
Target Start/End: Original strand, 30223037 - 30223187
Alignment:
Q  165 ggggccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgct 264  Q
    |||||||||||||||||| ||||||||||| ||||||  ||||||||| |||||||||  | ||||||||||| |||  |  |||  |   |||||| ||    
T  30223037 ggggccaaattggcttgagcttcctagagacatcacatcaaacattctccaaaggcttggtccagttgaaattctgaagaaggcacgcaatgtgtgtcct 30223136  T
Q  265 ctatggtggaacatttgcaaggaacctctcatgtggccaacctttcacatg 315  Q
       |||||||||||||||||||| |||||||||||||  ||| ||||||||    
T  30223137 tattggtggaacatttgcaaggatcctctcatgtggcgcaccattcacatg 30223187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 166 - 301
Target Start/End: Complemental strand, 36309899 - 36309765
Alignment:
Q  166 gggccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgctc 265  Q
    ||||| ||||||||||| ||||||| |||| | |||  |||||| ||||| ||||||  |||  ||||||||||||| |||||||  | ||||||| | |    
T  36309899 gggccgaattggcttgatcttcctatagatttgacagcaaacatccttcataggcttggtgcgtttgaaattgtgacgagtgcat-gcgagtgtgtccgc 36309801  T
Q  266 tatggtggaacatttgcaaggaacctctcatgtggc 301  Q
     ||||||||||||||||||||| ||||| |||||||    
T  36309800 aatggtggaacatttgcaaggatcctctaatgtggc 36309765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 314
Target Start/End: Original strand, 29856789 - 29856935
Alignment:
Q  168 gccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgctcta 267  Q
    ||||||||||||||| ||||  ||||| ||||||  |||||| |||||||||||| || || ||||||| |||| ||||||||  | ||| ||| |||||    
T  29856789 gccaaattggcttgaacttctgagagaaatcacagcaaacatccttcaaaggcttgatacaattgaaatcgtgaaaagtgcatgtcaagtttgtcctcta 29856888  T
Q  268 tggtggaacatttgcaaggaacctctcatgtggccaacctttcacat 314  Q
    |||||| |||| || || || |||||| ||||||  ||| |||||||    
T  29856889 tggtgggacatatgtaaagatcctctcctgtggcgtaccattcacat 29856935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 165 - 315
Target Start/End: Original strand, 30230278 - 30230428
Alignment:
Q  165 ggggccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgct 264  Q
    |||||||||||||||||| ||||||||||| || |||  ||||||||| |||||||||  ||  || |||||| |||||| ||||  |   |||||| ||    
T  30230278 ggggccaaattggcttgagcttcctagagacattacatcaaacattctccaaaggcttggtgtggtcgaaattttgacaaatgcacgcaatgtgtgtcct 30230377  T
Q  265 ctatggtggaacatttgcaaggaacctctcatgtggccaacctttcacatg 315  Q
       ||||||| |||||||||||| |||| ||||||||  ||| ||||||||    
T  30230378 tattggtggagcatttgcaaggatcctcgcatgtggcgcaccattcacatg 30230428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 30239053 - 30239110
Alignment:
Q  244 agtgcatccctagtgtgtgctctatggtggaacatttgcaaggaacctctcatgtggc 301  Q
    ||||||| |||||| ||| |||||||||||||||| |||||||| |||||||||||||    
T  30239053 agtgcatgcctagtatgtcctctatggtggaacatatgcaaggatcctctcatgtggc 30239110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 301
Target Start/End: Complemental strand, 36334015 - 36333946
Alignment:
Q  232 gaaattgtgacaagtgcatccctagtgtgtgctctatggtggaacatttgcaaggaacctctcatgtggc 301  Q
    ||||||||||| ||||| | || ||||||| | | ||||||||||||||||||||| |||||||||||||    
T  36334015 gaaattgtgacgagtgcttgccgagtgtgtccacaatggtggaacatttgcaaggatcctctcatgtggc 36333946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 300
Target Start/End: Complemental strand, 36321407 - 36321276
Alignment:
Q  169 ccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgctctat 268  Q
    |||||||||||||| ||||| || ||| | ||| ||||||| ||||| ||||||  | |  ||||||||||||| ||||| | || ||| ||  | | ||    
T  36321407 ccaaattggcttgatcttccaagtgatttgacagaaaacatccttcagaggcttggtacgtttgaaattgtgacgagtgcttgccgagtatgcccacaat 36321308  T
Q  269 ggtggaacatttgcaaggaacctctcatgtgg 300  Q
    ||| ||||||||||||||| || |||||||||    
T  36321307 ggttgaacatttgcaaggatccactcatgtgg 36321276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 287
Target Start/End: Complemental strand, 16053719 - 16053601
Alignment:
Q  169 ccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgctctat 268  Q
    |||||||||||||| |||||||||||| | |||  ||| || ||||| ||||||  |||| |||||||| | |||||||||| |  ||||||  |||| |    
T  16053719 ccaaattggcttgatcttcctagagatttgacatcaaatatccttcagaggcttggtgcatttgaaattttaacaagtgcatgcggagtgtgccctcttt 16053620  T
Q  269 ggtggaacatttgcaagga 287  Q
    |||||||||||||||||||    
T  16053619 ggtggaacatttgcaagga 16053601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 293
Target Start/End: Complemental strand, 5569561 - 5569436
Alignment:
Q  168 gccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgctcta 267  Q
    ||||||||||||||  ||||| ||||| |||||    ||||| |||||||||||| || |  ||||  | || ||||||||||  | ||||||| |||||    
T  5569561 gccaaattggcttgcacttccaagagacatcacggtgaacatccttcaaaggcttgatactattgatgtagtaacaagtgcatgtcaagtgtgtcctcta 5569462  T
Q  268 tggtggaacatttgcaaggaacctct 293  Q
    |||||||||||||||||||| |||||    
T  5569461 tggtggaacatttgcaaggatcctct 5569436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 168 - 292
Target Start/End: Complemental strand, 5574539 - 5574415
Alignment:
Q  168 gccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgctcta 267  Q
    ||||||||||||||  ||||| ||||| |||||    ||||| |||||||||||| || |  ||||  | || ||||||||||  | ||||||| |||||    
T  5574539 gccaaattggcttgcacttccaagagacatcacggtgaacatccttcaaaggcttgatactattgatgtagtaacaagtgcatgtcaagtgtgtcctcta 5574440  T
Q  268 tggtggaacatttgcaaggaacctc 292  Q
    |||||||||||||||||||| ||||    
T  5574439 tggtggaacatttgcaaggatcctc 5574415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 301
Target Start/End: Complemental strand, 16955766 - 16955669
Alignment:
Q  204 aaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgctctatggtggaacatttgcaaggaacctctcatgtggc 301  Q
    ||||||||| || |||||| || |  |||||||||| ||||||| ||  | ||||||  || |||||||||| ||||||||||| |||||||||||||    
T  16955766 aaacattctccagaggcttgatactattgaaattgtcacaagtgtatgtcaagtgtgccctttatggtggaatatttgcaaggatcctctcatgtggc 16955669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 301
Target Start/End: Complemental strand, 16966320 - 16966187
Alignment:
Q  168 gccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgctcta 267  Q
    ||||||||||||||| || || |||||| | |||  ||| ||||| || |||||| || |  ||||||| || ||||||| ||  | ||||||| || ||    
T  16966320 gccaaattggcttgaactacccagagatttgacaataaatattctccagaggcttgatactattgaaatagtcacaagtgtatgtcaagtgtgtccttta 16966221  T
Q  268 tggtggaacatttgcaaggaacctctcatgtggc 301  Q
    |||||||| ||||||||||| |||| ||||||||    
T  16966220 tggtggaatatttgcaaggatcctcacatgtggc 16966187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 314
Target Start/End: Complemental strand, 14934639 - 14934493
Alignment:
Q  168 gccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgctcta 267  Q
    ||||||||||||||| ||||| |||||| | ||   ||||||||| |||||||||  |||  |||||||  || | |||||||  | ||||||  ||||     
T  14934639 gccaaattggcttgaacttccaagagatgtgactgcaaacattctccaaaggcttggtgccattgaaatattggctagtgcatgtcaagtgtgccctctt 14934540  T
Q  268 tggtggaacatttgcaaggaacctctcatgtggccaacctttcacat 314  Q
    |||||||| |||| |||||| |||| ||||||||  ||| |||||||    
T  14934539 tggtggaatattttcaaggatcctcacatgtggcacaccgttcacat 14934493  T

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