View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16471_high_29 (Length: 327)

Name: NF16471_high_29
Description: NF16471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16471_high_29
NF16471_high_29
[»] chr3 (1 HSPs)
chr3 (18-311)||(51675319-51675597)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 51675597 - 51675319
Alignment:
Q  18 ctaactacttaaaaagagtatcatttcaacactttttggaaagnnnnnnnncatcaattaaatcttcgtgtcgtattttcttaaaaagatcattttcaat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||    
T  51675597 ctaactacttaaaaagagtatcatttcaacactttttggaaagaaaaaaaacatcaattaaatcttcgtgtcgtattttcttaaaaagatcattttcaat 51675498  T
Q  118 tgctatcattgtagggttaaaattacataattaaaattgcactatattatgcagaccacaaaattaataaagggttaaaataacttttctttttacagaa 217  Q
    ||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  51675497 tgctatcattgtagggttaaaatt--------------gcactatattatgcagaccacaaaattaataaagggttaaaataacttttctttt-acagaa 51675413  T
Q  218 aacactatctttttactcaaacgctaaatattatttaggccttataagcaaagatggatgagaactactccatctctatttataagcaaaaatg 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  51675412 aacactatctttttactcaaacgctaaatattatttaggccttataagcaaaaatggatgaaaactactccatctctatttataagcaaaaatg 51675319  T

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