View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16471_high_3 (Length: 754)
Name: NF16471_high_3
Description: NF16471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16471_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 615; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 1 - 736
Target Start/End: Complemental strand, 18145285 - 18144548
Alignment:
| Q |
1 |
acgacaatcgggcacgccttatccaaggagtatgagtatatgtgcttcatcataatatcaatttggtattgtgtttaatgtgaattttgataatgcttgc |
100 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18145285 |
acgacactcggacacgccttatccaaggagtatgagtatatgtgcttcatcataatatcaatttggtattgtgtttaatgtgaattttgataatgcttgc |
18145186 |
T |
|
| Q |
101 |
agtgaattttgaatttcctttcaggtttaattaaaaaatcattagtgactaaagccaaggcgaatgcaagaaaagaaagtgctaaacttcgaaacagaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
18145185 |
agtgaattttgaatttcctttcaggtttaattaaaaaatcattagtgactaaagccaaggcgaatgcaagaaaagaaagtgctaaaattcgaaacaggaa |
18145086 |
T |
|
| Q |
201 |
gatgcagaaaaaggtacatcttataagaatactgtatacttgttcttttgattgtaacatgtgttggtgtagtgtcactgtctgacatcgactcgcatcg |
300 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18145085 |
gatgcagaaaaaggtacgtcttataagaatactgtatagttgttcttttgattgtaacatgtgttggtgtagtgtcactgtctgacatcgactcgcatcg |
18144986 |
T |
|
| Q |
301 |
aacaccagacacactttcagtagaagtgtcggtgctacataggtttgttgtgtctagaagtttatcactcatttattgagttacttcaattagtgtttat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
18144985 |
aacaccagacacactttcagtagaagtgtcggtgctacataggtttgttgtgtctagaagtttatcactcatttattgagttacttcaattagcgtttat |
18144886 |
T |
|
| Q |
401 |
cctcaatcttttattaataccatgttatcctgccc--nnnnnnnnagtttaatggtactgcaatacatccaaggctttcagtattttgctcagataagca |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18144885 |
cctcaatcttttattaataccatgttatcctgcccttttttttttagtttaatggtactgccacacatccaaggctttcagtattttgctcagataagca |
18144786 |
T |
|
| Q |
499 |
attgtatgcaatccttgtagatgaccaaaataagaagtgcttattctatggaagcacgctgcagaaattgttccgagaaaatcctccctgcagcactgtt |
598 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
18144785 |
attgtatgcaatgcttgtagatgatcaaaataaaaagtgcttattctatggaagcacactgcagaaattgttccgagaaaatcctccctgcagcactatt |
18144686 |
T |
|
| Q |
599 |
gtaagtagtccgactcattattgagtcaaatgttgtatgagactaggataacaacctttgttacattagactttagctttggattttttcttatgtttgg |
698 |
Q |
| |
|
||||||||||| ||||||| ||||| ||||| |||||||||||| ||| |||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
18144685 |
gtaagtagtccaactcatttttgagacaaatattgtatgagacttggaaaacaacttttgttacattagactttagctttggatttttccttatgtttgg |
18144586 |
T |
|
| Q |
699 |
gtgaaatattgttttaggaagctgctcaacgtgttggg |
736 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18144585 |
gtgaaatattgttttaggaagctgctcaacgtgttggg |
18144548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 513 - 602
Target Start/End: Complemental strand, 18143196 - 18143107
Alignment:
| Q |
513 |
ttgtagatgaccaaaataagaagtgcttattctatggaagcacgctgcagaaattgttccgagaaaatcctccctgcagcactgttgtaa |
602 |
Q |
| |
|
|||||||||||||||| ||||| || |||||||||||||| | ||| | ||| |||| ||||||||||| |||| || || ||||||| |
|
|
| T |
18143196 |
ttgtagatgaccaaaacaagaaatgtttattctatggaagaagactgtacgaatcgttcggagaaaatccttcctgtagaacagttgtaa |
18143107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University