View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16471_high_31 (Length: 303)
Name: NF16471_high_31
Description: NF16471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16471_high_31 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 7352949 - 7352674
Alignment:
| Q |
18 |
gaaagaaggtaaggaagtggataaggtagttggtgctaggaaggaagagctggaaaatgcaatcaccaagcataaggatgcaactgttgctactgcttga |
117 |
Q |
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| T |
7352949 |
gaaagaaggtaaggaagtggataaggtagtcggtgctaggaaggaagagctggaaaatgcaatcaccaagcataaggatgcaactgttgctactgcttga |
7352850 |
T |
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| Q |
118 |
agtactagatgaagatcatgaataataataatacatttatcctttatcggttttcatgtttttattatgcttgaaaataaattgttgcattggcctactt |
217 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7352849 |
agtattagatgaagatcatgaataataatattacatttatcctttgtcggttttcatgtttttattatgcttgaaaataaattgttgcattggcctactt |
7352750 |
T |
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| Q |
218 |
caattgactagtgagtagtgactaaaatttgtttgtatcattatgataatttgatgtaaatgccatggtccctttg |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7352749 |
caattgactagtgagtagtgactaaaatttgtttgtatcattatgataatttgatgtaaatgccatggtccctttg |
7352674 |
T |
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