View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16471_high_32 (Length: 293)
Name: NF16471_high_32
Description: NF16471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16471_high_32 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 20358548 - 20358847
Alignment:
| Q |
1 |
aaatgaagaaaaaggagaaacaagatgaacacctgataaatcagagatggttcaatggaatattaaagaagattcttgaagaattattggatgaaggatg |
100 |
Q |
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| T |
20358548 |
aaatgaagaaaaaggagaaacaagatgaacacctgataaatcagagatggttcaatgggatattaaagaagattcttgaagaattcttggatgaaggatg |
20358647 |
T |
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| Q |
101 |
tt------gctaatgtaaatttgaataatgagagaacaagtgacaaactgatatggtggtgtgacaatcatatgtgaaataaattttgcaattttatttt |
194 |
Q |
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| T |
20358648 |
tttgttttgttaatgtaaatttgaataatgagagaacaagtgacaaactgatatcgtggtgtgacaatcatatgtgaaataaattttgcaattttatttt |
20358747 |
T |
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| Q |
195 |
ctatatcattaatgtannnnnnnnaaac----------------atatgaattgccacattgttcagtgatttgtaaactgattattcagtataacacat |
278 |
Q |
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| T |
20358748 |
ctatatcattaatgtattgtttttaaacatatgaattgccaaagatatgaattgccacattgttcagtgatttgtaaactgattattcagtataacacat |
20358847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 20359316 - 20359354
Alignment:
| Q |
103 |
gctaatgtaaatttgaataatgagagaacaagtgacaaa |
141 |
Q |
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| T |
20359316 |
gctaatgtaaatttgaataatgagagaacaagtaacaaa |
20359354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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