View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16471_high_36 (Length: 264)
Name: NF16471_high_36
Description: NF16471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16471_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 25 - 222
Target Start/End: Complemental strand, 48040781 - 48040584
Alignment:
| Q |
25 |
gttatgaatcctgtctagtatttccactcatccaatacagcatcctcatggacctcagtcctttctgtgctggctttttgttacccaacactttatctca |
124 |
Q |
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| T |
48040781 |
gttatgaatcctgtctagtatttccactcatccaatacagcatcctcatggacctcagtcctttctgtgctggctttttgttacccaacactttatctca |
48040682 |
T |
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| Q |
125 |
tgcaactacgcagcttttcatatgattataaaagaaattagttaccaattgtaattgaaaagtgagagttcgtgatgttaggacataactctggctac |
222 |
Q |
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| T |
48040681 |
tgcaactacgcagcttttcatatgattataaaagaaattagttaccaattgtaattgaaaagtgagagttcgtgatgttaggacataactctggctac |
48040584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 37 - 257
Target Start/End: Complemental strand, 48049061 - 48048840
Alignment:
| Q |
37 |
gtctagtatttccactcatccaatacagcatcctcatggacctcagtcctttctgtgctggctttttgttacccaacactttatctcatgcaactacgca |
136 |
Q |
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| T |
48049061 |
gtctagtattgccactcatcaagtacagcatcctcatggacctcaatcctttttgtgctggctttttactacccaacactctatctcatacaacaacaca |
48048962 |
T |
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| Q |
137 |
gctttt-catatgattataaaagaaattagttaccaattgtaattgaaaagtgagagttcgtgatgttaggacataactctggctactagtacaatattc |
235 |
Q |
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| T |
48048961 |
gctttttcatatgattataacagaaattagtcatcaattgaaattgaaaagggagagttcatgatattaggacataactttggctactagtacattcttc |
48048862 |
T |
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| Q |
236 |
atgtatcacagtattcatctca |
257 |
Q |
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| T |
48048861 |
atgtatcacagcattcatctca |
48048840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 255
Target Start/End: Original strand, 29813279 - 29813495
Alignment:
| Q |
37 |
gtctagtatttccactcatccaatacagcatcctcatggacctcagtcctttctgtgctggctttttgttacccaacactttatctcatgcaactacgca |
136 |
Q |
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||||||||||||| |||||||| | ||||||||||||||||| || || ||| |||| ||||||| |||| |||||||| |||||| |||| | ||| |
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| T |
29813279 |
gtctagtatttcccctcatccattgcagcatcctcatggaccacaatcttttttgtgttggcttt---ttactcaacacttcatctcagacaacaatgca |
29813375 |
T |
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| Q |
137 |
gc-ttttcatatgattataaaagaaattagttaccaattgtaattgaaaagtgagagttcgtgatgttaggacataactctggctactagtacaatattc |
235 |
Q |
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| T |
29813376 |
actttttcacatgattataaaagaaactatttgtcaattgtaattttaaatggagactttatcacattaggacaaaaatctggatactaatacattatac |
29813475 |
T |
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| Q |
236 |
atgtatcacagtattcatct |
255 |
Q |
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| T |
29813476 |
atgtatcacagcattcatct |
29813495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 48040413 - 48040371
Alignment:
| Q |
215 |
ctggctactagtacaatattcatgtatcacagtattcatctca |
257 |
Q |
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| T |
48040413 |
ctggctactagtacaatattcatgtatcacagtattcatctca |
48040371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 48053339 - 48053289
Alignment:
| Q |
207 |
acataactctggctactagtacaatattcatgtatcacagtattcatctca |
257 |
Q |
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| T |
48053339 |
acataagtctggctactagttcattattcaagtatcacagcattcatctca |
48053289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 22090060 - 22090019
Alignment:
| Q |
32 |
atcctgtctagtatttccactcatccaatacagcatcctcat |
73 |
Q |
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| T |
22090060 |
atcctgtctagtcttaccactcatccaacacagcatcctcat |
22090019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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