View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16471_high_4 (Length: 744)
Name: NF16471_high_4
Description: NF16471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16471_high_4 |
 | |
|
| [»] scaffold0019 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0019 (Bit Score: 531; Significance: 0; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 13 - 623
Target Start/End: Complemental strand, 54617 - 53986
Alignment:
| Q |
13 |
ataatacttgagattggagattttactatgaagttaggacctttctaccattttggatattgtactgctcattagttgagtgtctgcatctgcatcgttc |
112 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54617 |
ataatactggagattggagattttactatgaagttaggacctttctaccattttggatattgtactgctcattagttgagtgtctgcatctgcatcgttc |
54518 |
T |
|
| Q |
113 |
agattcaggtgaacgaatctgtttttctttgctatttcggcaaacctgatgatatttttagtaagttctttaaaacatagatatagtgttttgttccgtg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54517 |
agattcaggtgaacgaatctgtttttctttgctatttcggcaaacctgatgatatttttagtaagttctttaaaacatagatatagtgttttgttccgtg |
54418 |
T |
|
| Q |
213 |
catatagcagacgaaagtagaggaaagactatataatggagtttctcaccaaatttccgaagctt---------------------atgttgcgttttta |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
54417 |
catatagcagacgaaagtagaggaaagactatataatggagtttctcaccaaatttccgaagcttgcaattttgatttcgagttgaatgttgcgttttta |
54318 |
T |
|
| Q |
292 |
tgtttaggaatgatgattccattaaatannnnnnnctcttatcatattacttttgaaatattaatttgcaacttatgattcacttttggatttcggtttt |
391 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54317 |
tgtttaggaatgatgattccattaaatatttttttctcttatcatattacttttgaaatattaatttgcaacttatgattcacttttggatttcggtttt |
54218 |
T |
|
| Q |
392 |
agtcttttaactttatgtcagtgtttgttcctgacaagtggaatgaagttaattacaatggtaatgaatatatgatgtgctaaatttctgaatttcagga |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54217 |
agtcttttaactttatgtcagtgtttgttcctgacaagtggaatgaagttaattacaatggtaatgaatatatgatgtgctaaatttctgaatttcagga |
54118 |
T |
|
| Q |
492 |
tattaatttaggatcaatccctctttgttctaaaacatgtcatcaaaacctttcaaagtaagaagatcgtcactatcaacaacttctgatgattttgttg |
591 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
54117 |
tattaatttaggatcaatccctctttgttctaaaatatgtcatcaaaacctttcaaagtaagaagatcgtcactatcagcaacttctgatgattttgttg |
54018 |
T |
|
| Q |
592 |
atccaactgagttgatgagcgcacaatggaaa |
623 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
54017 |
atccaactgagttgatgagcgcacaatggaaa |
53986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 625 - 727
Target Start/End: Complemental strand, 53480 - 53378
Alignment:
| Q |
625 |
aaccgtctcttgtcacagcaaacaccattctgtccattctggcagctgattatgcagttgagaagctttcttgctatgtttctgacgacgcgggtgcact |
724 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
53480 |
aaccgtctcttgtcacagcaaacaccattctgtccattctggcagctgattatgcagttgagaagctttcatgctatgtttctgacgacgcgggtgcact |
53381 |
T |
|
| Q |
725 |
ttt |
727 |
Q |
| |
|
||| |
|
|
| T |
53380 |
ttt |
53378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 368 - 510
Target Start/End: Complemental strand, 29921018 - 29920876
Alignment:
| Q |
368 |
gattcacttttggatttcggttttagtcttttaactttatgtcagtgtttgttcctgacaagtggaatgaagttaattacaatggtaatgaatatatgat |
467 |
Q |
| |
|
|||||||||||| | || |||| ||||||||||||||||||| ||||||||||||||| | || || ||||||||||||||| | |||| || |||| |
|
|
| T |
29921018 |
gattcacttttgaactttggttgtagtcttttaactttatgtaagtgtttgttcctgaggtggggtataaagttaattacaatgttggtgaagatctgat |
29920919 |
T |
|
| Q |
468 |
gtgctaaatttctgaatttcaggatattaatttaggatcaatc |
510 |
Q |
| |
|
||| ||||||| |||||| ||||||||||||||||||| |||| |
|
|
| T |
29920918 |
gtgttaaatttttgaattgcaggatattaatttaggataaatc |
29920876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 620 - 727
Target Start/End: Complemental strand, 29919185 - 29919078
Alignment:
| Q |
620 |
gaaagaaccgtctcttgtcacagcaaacaccattctgtccattctggcagctgattatgcagttgagaagctttcttgctatgtttctgacgacgcgggt |
719 |
Q |
| |
|
||||||||| | |||||||||||||||||||| |||| ||| | || ||||| ||| ||||||||||||||||||||||||||||||| || | |||| |
|
|
| T |
29919185 |
gaaagaaccaccacttgtcacagcaaacaccatcttgtcgattttagctgctgactatccagttgagaagctttcttgctatgtttctgatgatgggggt |
29919086 |
T |
|
| Q |
720 |
gcactttt |
727 |
Q |
| |
|
|||||||| |
|
|
| T |
29919085 |
gcactttt |
29919078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 620 - 727
Target Start/End: Original strand, 47918050 - 47918157
Alignment:
| Q |
620 |
gaaagaaccgtctcttgtcacagcaaacaccattctgtccattctggcagctgattatgcagttgagaagctttcttgctatgtttctgacgacgcgggt |
719 |
Q |
| |
|
||||||||| | ||||||||||||||||| || |||| || | || ||||| ||| ||||||||||||||||||||||||||||||| || | ||| |
|
|
| T |
47918050 |
gaaagaaccaccacttgtcacagcaaacactatcttgtcgatcttagctgctgactatccagttgagaagctttcttgctatgtttctgatgatggaggt |
47918149 |
T |
|
| Q |
720 |
gcactttt |
727 |
Q |
| |
|
|||||||| |
|
|
| T |
47918150 |
gcactttt |
47918157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University