View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16471_high_44 (Length: 212)
Name: NF16471_high_44
Description: NF16471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16471_high_44 |
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| [»] scaffold0157 (1 HSPs) |
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Alignment Details
Target: scaffold0157 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 15439 - 15563
Alignment:
| Q |
11 |
aataatatcacgataagttacaccacttatttgtacttctgatttctgcataatcatattcc-aaaaataaatcatttcaaaagtaataatgttatgtat |
109 |
Q |
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| T |
15439 |
aataacatcacgataagttacaccacttatttgtacttctgatttctgcataatcatattccaaaaaataaatcatttcaaaagtaataatgttatg--- |
15535 |
T |
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| Q |
110 |
atatggtatgactatataagtctgaattt |
138 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
15536 |
-tatggtatgactatataagtctgaattt |
15563 |
T |
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Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 12505038 - 12504914
Alignment:
| Q |
11 |
aataatatcacgataagttacaccacttatttgtacttctgatttctgcataatcatattcca-aaaataaatcatttcaaaagtaataatgttatgtat |
109 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
12505038 |
aataacatcacgataagttacaccacttatttgtacttctgatttctgcataatcatattccaaaaaataaatcatttcaaaagtaataatgttatg--- |
12504942 |
T |
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| Q |
110 |
atatggtatgactatataagtctgaattt |
138 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
12504941 |
-tatggtatgactatataagtctgaattt |
12504914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 10768889 - 10768825
Alignment:
| Q |
22 |
gataagttacaccacttatttgtacttctgatttctgcataatcatattccaaaaataaatcatt |
86 |
Q |
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| T |
10768889 |
gatatgttacccctcttatttgtactcctgatttctgaataatcatattacaaaaataaatcatt |
10768825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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