View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16471_high_7 (Length: 679)

Name: NF16471_high_7
Description: NF16471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16471_high_7
NF16471_high_7
[»] chr4 (2 HSPs)
chr4 (1-618)||(22015951-22016567)
chr4 (115-151)||(30871763-30871799)
[»] chr2 (4 HSPs)
chr2 (245-348)||(40059108-40059211)
chr2 (245-348)||(40077136-40077239)
chr2 (245-348)||(40085046-40085149)
chr2 (415-464)||(5453660-5453709)
[»] chr8 (2 HSPs)
chr8 (414-461)||(16657507-16657554)
chr8 (117-149)||(34489298-34489330)
[»] chr1 (2 HSPs)
chr1 (118-153)||(47126339-47126374)
chr1 (116-152)||(5243300-5243336)
[»] chr6 (2 HSPs)
chr6 (115-152)||(2002150-2002187)
chr6 (117-149)||(4323827-4323859)
[»] chr5 (1 HSPs)
chr5 (117-154)||(35053681-35053718)
[»] chr3 (3 HSPs)
chr3 (120-153)||(25204150-25204183)
chr3 (275-348)||(44352747-44352820)
chr3 (116-152)||(26643224-26643260)


Alignment Details
Target: chr4 (Bit Score: 598; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 1 - 618
Target Start/End: Original strand, 22015951 - 22016567
Alignment:
Q  1 ccaaaatatgtaatcaatcatttatttaatgtctttcaatagaaaaagttctgaaaatacactatctgataaatatctaaatgatcttctatctatgaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22015951 ccaaaatatgtaatcaatcatttatttaatgtctttcaatagaaaaagttctgaaaatacactatctgataaatatctaaatgatcttctatctatgaag 22016050  T
Q  101 cacggatgcagacatggacacaccttcaatctaaagtgtcggtgctacatagtcttctaagcttttatgtttgaacactcacacaatgcaatgtaagaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22016051 cacggatgcagacatggacacaccttcaatctaaagtgtcggtgctacatagtcttttaagcttttatgtttgaacactcacacaatgcaatgtaagaaa 22016150  T
Q  201 tagaaaagggaaaacagaagaacaatatgaagatggaaaagaacagaacctggcctcgaaccggttcgtgcaggttccagaaaacataagtctcaatcac 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22016151 tagaaaagggaaaacagaagaacaatatgaagatggaaaagaacagaacctggcctcgaaccggctcgtgcaggttccagaaaacataagtctcaatcac 22016250  T
Q  301 atcaattcccccatcttttgatttctgaataaggtcaggccacatctacaataacaaaatataccattgttataagttcaaacatcaaacacaaattgaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22016251 atcaattcccccatcttttgatttctgaataaggtcaggccacatctacaataacaaaatataccattgttataagttcaaacatcaaacacaaattgaa 22016350  T
Q  401 aaagtactgtatatctatgaagcaccgacacaaacacatacatcaaacacaacactgacacgtaaacattgtaataatagttagaagaaaaaataaataa 500  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22016351 aaagtactgtatatctatgaagcacagacacaaacacatacatcaaacacaacactgacacgtaaacattgtaataatagttagaagaaaaaa-aaataa 22016449  T
Q  501 atgtcattaaatgtaatcccatatatcagtgtcataatggtatataacaccgacaaatgttaaacacaagacacattttcaatctgaagtgttagtgcta 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22016450 atgtcattaaatgtaatcccatatatcagtgtcataatggtatataacaccgacaaatgttaaacacaagacacattttcaatctgaagtgttagtgcta 22016549  T
Q  601 cgtgctacacgggtgtat 618  Q
    ||||||||||||||||||    
T  22016550 cgtgctacacgggtgtat 22016567  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 30871799 - 30871763
Alignment:
Q  115 tggacacaccttcaatctaaagtgtcggtgctacata 151  Q
    |||||||||| |||||||||||||| |||||||||||    
T  30871799 tggacacaccatcaatctaaagtgttggtgctacata 30871763  T

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Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 245 - 348
Target Start/End: Complemental strand, 40059211 - 40059108
Alignment:
Q  245 agaacctggcctcgaaccggttcgtgcaggttccagaaaacataagtctcaatcacatcaattcccccatcttttgatttctgaataaggtcaggccaca 344  Q
    ||||||||||||  ||| ||||| || | ||||||||||||||| || ||||| ||||||| ||| |||||||| ||||||||||||||||| |||||||    
T  40059211 agaacctggcctttaacaggttcatgtaagttccagaaaacataggtttcaataacatcaagtcctccatctttagatttctgaataaggtctggccaca 40059112  T
Q  345 tcta 348  Q
    ||||    
T  40059111 tcta 40059108  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 245 - 348
Target Start/End: Complemental strand, 40077239 - 40077136
Alignment:
Q  245 agaacctggcctcgaaccggttcgtgcaggttccagaaaacataagtctcaatcacatcaattcccccatcttttgatttctgaataaggtcaggccaca 344  Q
    ||||||||||||  ||| ||||| || | ||||||||||||||| || ||||| ||||||| ||| |||||||| ||||||||||||||||| |||||||    
T  40077239 agaacctggcctttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccaca 40077140  T
Q  345 tcta 348  Q
    ||||    
T  40077139 tcta 40077136  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 245 - 348
Target Start/End: Complemental strand, 40085149 - 40085046
Alignment:
Q  245 agaacctggcctcgaaccggttcgtgcaggttccagaaaacataagtctcaatcacatcaattcccccatcttttgatttctgaataaggtcaggccaca 344  Q
    ||||||||||||  ||| ||||| || | ||||||||||||||| || ||||| ||||||| ||| |||||||| ||||||||||||||||| |||||||    
T  40085149 agaacctggcctttaacaggttcatgtaagttccagaaaacataggtttcaataacatcaagtcctccatctttagatttctgaataaggtctggccaca 40085050  T
Q  345 tcta 348  Q
    ||||    
T  40085049 tcta 40085046  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 464
Target Start/End: Original strand, 5453660 - 5453709
Alignment:
Q  415 ctatgaagcaccgacacaaacacatacatcaaacacaacactgacacgta 464  Q
    ||||||||||| |||||| ||||| ||| ||||||||||||| |||||||    
T  5453660 ctatgaagcactgacacatacacaaacaccaaacacaacactaacacgta 5453709  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 414 - 461
Target Start/End: Complemental strand, 16657554 - 16657507
Alignment:
Q  414 tctatgaagcaccgacacaaacacatacatcaaacacaacactgacac 461  Q
    ||||||||||||||||||||||||| ||||||||||| ||| ||||||    
T  16657554 tctatgaagcaccgacacaaacacagacatcaaacacgacaatgacac 16657507  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 34489298 - 34489330
Alignment:
Q  117 gacacaccttcaatctaaagtgtcggtgctaca 149  Q
    |||||||||||||||||||||||||||||||||    
T  34489298 gacacaccttcaatctaaagtgtcggtgctaca 34489330  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 153
Target Start/End: Original strand, 47126339 - 47126374
Alignment:
Q  118 acacaccttcaatctaaagtgtcggtgctacatagt 153  Q
    ||||||||||||||||||||||||||| ||||||||    
T  47126339 acacaccttcaatctaaagtgtcggtgatacatagt 47126374  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 5243300 - 5243336
Alignment:
Q  116 ggacacaccttcaatctaaagtgtcggtgctacatag 152  Q
    ||||||||||||||||  |||||||||||||||||||    
T  5243300 ggacacaccttcaatcagaagtgtcggtgctacatag 5243336  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 2002187 - 2002150
Alignment:
Q  115 tggacacaccttcaatctaaagtgtcggtgctacatag 152  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  2002187 tggacaaaccttcaatctaatgtgtcggtgctacatag 2002150  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 4323859 - 4323827
Alignment:
Q  117 gacacaccttcaatctaaagtgtcggtgctaca 149  Q
    |||||||||||||||||||||||| ||||||||    
T  4323859 gacacaccttcaatctaaagtgtcagtgctaca 4323827  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 35053718 - 35053681
Alignment:
Q  117 gacacaccttcaatctaaagtgtcggtgctacatagtc 154  Q
    |||||||||||||||  |||||||||||||||||||||    
T  35053718 gacacaccttcaatcagaagtgtcggtgctacatagtc 35053681  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 153
Target Start/End: Complemental strand, 25204183 - 25204150
Alignment:
Q  120 acaccttcaatctaaagtgtcggtgctacatagt 153  Q
    |||| |||||||||||||||||||||||||||||    
T  25204183 acacattcaatctaaagtgtcggtgctacatagt 25204150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 348
Target Start/End: Original strand, 44352747 - 44352820
Alignment:
Q  275 ttccagaaaacataagtctcaatcacatcaattcccccatcttttgatttctgaataaggtcaggccacatcta 348  Q
    |||||||||||||| || ||||| ||||| ||||| || ||||||| | | ||||||||  |||||||||||||    
T  44352747 ttccagaaaacataggtttcaatgacatctattccaccttcttttgctgtttgaataagagcaggccacatcta 44352820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 26643260 - 26643224
Alignment:
Q  116 ggacacaccttcaatctaaagtgtcggtgctacatag 152  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  26643260 ggacaaaccttcaatctgaagtgtcggtgctacatag 26643224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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