View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16471_high_8 (Length: 630)

Name: NF16471_high_8
Description: NF16471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16471_high_8
NF16471_high_8
[»] chr6 (15 HSPs)
chr6 (387-616)||(21861989-21862222)
chr6 (408-617)||(13167356-13167565)
chr6 (443-616)||(21862141-21862319)
chr6 (478-617)||(28063539-28063678)
chr6 (19-94)||(13167012-13167087)
chr6 (443-555)||(21862238-21862352)
chr6 (497-571)||(13167537-13167612)
chr6 (405-513)||(13097858-13097970)
chr6 (568-608)||(10741529-10741569)
chr6 (562-614)||(28063633-28063685)
chr6 (388-483)||(10741471-10741566)
chr6 (443-482)||(21862332-21862371)
chr6 (543-624)||(21862056-21862137)
chr6 (420-488)||(13097907-13097975)
chr6 (237-277)||(13167229-13167269)
[»] chr4 (12 HSPs)
chr4 (415-615)||(16870623-16870825)
chr4 (402-493)||(54147638-54147729)
chr4 (415-535)||(54147682-54147803)
chr4 (388-505)||(54147589-54147711)
chr4 (569-625)||(54147869-54147925)
chr4 (497-555)||(54147827-54147885)
chr4 (538-609)||(54147713-54147785)
chr4 (415-512)||(42265396-42265492)
chr4 (478-535)||(54147869-54147927)
chr4 (398-488)||(24225457-24225551)
chr4 (414-488)||(42265425-42265498)
chr4 (573-625)||(54147811-54147863)
[»] chr8 (4 HSPs)
chr8 (443-617)||(20242053-20242227)
chr8 (388-625)||(20241903-20242143)
chr8 (388-625)||(20250924-20251164)
chr8 (443-540)||(20250917-20251014)
[»] chr7 (15 HSPs)
chr7 (443-617)||(44338376-44338550)
chr7 (388-625)||(44338226-44338466)
chr7 (415-535)||(46963798-46963918)
chr7 (443-618)||(15623094-15623270)
chr7 (443-610)||(15623009-15623177)
chr7 (500-618)||(15623187-15623306)
chr7 (390-492)||(21813794-21813896)
chr7 (415-519)||(11828572-11828677)
chr7 (405-480)||(24487088-24487162)
chr7 (538-605)||(21813819-21813887)
chr7 (451-513)||(21813824-21813887)
chr7 (388-461)||(6530574-6530647)
chr7 (435-513)||(11828609-11828688)
chr7 (543-615)||(46963810-46963882)
chr7 (452-492)||(6530607-6530647)
[»] chr1 (7 HSPs)
chr1 (451-625)||(15629932-15630107)
chr1 (388-493)||(19825107-19825215)
chr1 (388-523)||(2072359-2072498)
chr1 (443-535)||(15629930-15630022)
chr1 (388-523)||(2075889-2076028)
chr1 (419-483)||(15630044-15630108)
chr1 (415-463)||(19825106-19825154)
[»] chr3 (9 HSPs)
chr3 (439-611)||(46691967-46692141)
chr3 (444-535)||(42530734-42530825)
chr3 (406-493)||(50295517-50295604)
chr3 (535-617)||(46692055-46692137)
chr3 (525-625)||(42530723-42530823)
chr3 (415-460)||(2593544-2593589)
chr3 (415-519)||(50295557-50295662)
chr3 (431-510)||(2593586-2593665)
chr3 (237-273)||(50295343-50295379)
[»] chr2 (13 HSPs)
chr2 (415-617)||(1173386-1173589)
chr2 (443-617)||(1173293-1173468)
chr2 (415-517)||(8986185-8986287)
chr2 (402-493)||(38584126-38584217)
chr2 (415-493)||(1173573-1173651)
chr2 (414-493)||(1173604-1173683)
chr2 (402-464)||(32290583-32290645)
chr2 (388-490)||(38584195-38584301)
chr2 (415-493)||(32290561-32290643)
chr2 (415-513)||(1173522-1173620)
chr2 (422-480)||(38584108-38584166)
chr2 (415-513)||(38584136-38584239)
chr2 (535-617)||(38584093-38584176)
[»] chr5 (11 HSPs)
chr5 (477-616)||(24136984-24137123)
chr5 (388-625)||(24136746-24136979)
chr5 (388-519)||(11335387-11335517)
chr5 (443-567)||(24136888-24137013)
chr5 (404-493)||(9511766-9511855)
chr5 (567-625)||(24136983-24137041)
chr5 (568-617)||(11335381-11335430)
chr5 (420-480)||(9511813-9511873)
chr5 (446-513)||(9511777-9511845)
chr5 (443-514)||(24137043-24137114)
chr5 (543-605)||(9511782-9511845)
[»] scaffold0499 (2 HSPs)
scaffold0499 (420-513)||(7238-7329)
scaffold0499 (405-514)||(7265-7378)
[»] scaffold0025 (1 HSPs)
scaffold0025 (405-464)||(154941-155004)


Alignment Details
Target: chr6 (Bit Score: 128; Significance: 7e-66; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 387 - 616
Target Start/End: Original strand, 21861989 - 21862222
Alignment:
Q  387 agtgagtcaacataatgctcacaattggtttgtttgtttggtgggtc---aagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggtt 483  Q
    |||||||||| ||| | ||||||||||||||||||||||| | |||    ||| ||||||||||||||||||||||||||| |||||||||| |||||||    
T  21861989 agtgagtcaaaatagttctcacaattggtttgtttgtttgtttggtgggaaagcgctcacaatttgcttgtttggtgagtcgaattctcacattttggtt 21862088  T
Q  484 gtttggtgagcatgtgctcacaatttggtttcttcttcccatttgattc-ttcaatttagttgtttggtgagtaaagttctcacatttggttgttcggtg 582  Q
    ||||| ||||| |||||||||||||||||||||||| ||| |||||||| |||||||| ||||||||||||||  |||||||||||||||||||| ||||    
T  21862089 gtttgttgagcgtgtgctcacaatttggtttcttctccccttttgattcgttcaatttggttgtttggtgagtctagttctcacatttggttgtttggtg 21862188  T
Q  583 agtcgagtgttcacaatttggtttcttctccccc 616  Q
    ||||||||| |||  |||||||||| ||||||||    
T  21862189 agtcgagtgctcaatatttggtttcctctccccc 21862222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 408 - 617
Target Start/End: Original strand, 13167356 - 13167565
Alignment:
Q  408 caattggtttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgtttggtgagcatgtgctcacaat 507  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||| ||||| | ||||||||||    
T  13167356 caatttgtttgtttgtttggtgggtcaagtgctcgcaatttgcttgtttggtgagtcgaattctcacacttt-gttgtttgctgagcgtatgctcacaat 13167454  T
Q  508 ttggtttcttcttcccatttgattcttcaatttagttgtttggtgagtaaagttctcacatttggttgtt-cggtgagtcgagtgttcacaatttggttt 606  Q
    ||||| |||||| ||| |||| ||||||||||| ||||| ||||||||||| |||||||||||  ||||| |||||||||||||| ||||| ||||||||    
T  13167455 ttggtgtcttctccccttttggttcttcaatttggttgtgtggtgagtaaaattctcacatttcattgttccggtgagtcgagtgctcacagtttggttt 13167554  T
Q  607 cttctccccct 617  Q
    |||||||||||    
T  13167555 cttctccccct 13167565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 443 - 616
Target Start/End: Original strand, 21862141 - 21862319
Alignment:
Q  443 caatttgcttgtttggtgagtcaaattctcacactttggttgtttggtgag-catgtgctcacaatttggtttcttcttccca-----tttgattcttca 536  Q
    ||||||| |||||||||||||| | |||||||| ||||||||||||||||| |  |||||||  |||||||||| ||| |||      | ||||||||||    
T  21862141 caatttggttgtttggtgagtctagttctcaca-tttggttgtttggtgagtcgagtgctcaatatttggtttcctctcccccccccttctgattcttca 21862239  T
Q  537 atttagttgtttggtgagtaaagttctcacatttggttgttcggtgagtcgagtgttcacaatttggtttcttctccccc 616  Q
    |||| ||||||||||||||  || ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  21862240 atttggttgtttggtgagtctagctctcacatttggttgtttggtgagtcgagtgctcacaatttggtttcttctccccc 21862319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 478 - 617
Target Start/End: Complemental strand, 28063678 - 28063539
Alignment:
Q  478 ttggttgtttggtgag-catgtgctcacaatttggtttcttcttcccatttgattcttcaatttagttgtttggtgagtaaagttctcacatttggttgt 576  Q
    |||||||||||||||| || ||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||  |||||||||||||||||||    
T  28063678 ttggttgtttggtgagtcaggtgctcacaatttggtttcttct-cccttttgattcttcaatttggttgtttggtgagtctagttctcacatttggttgt 28063580  T
Q  577 tcggtgagtcgagtgttcacaatttggtttcttctccccct 617  Q
    | ||| ||| || |  || ||||||| ||||||| ||||||    
T  28063579 ttggtaagttgaattctcccaatttgatttcttcaccccct 28063539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 13167012 - 13167087
Alignment:
Q  19 acaactaccgaatgattgacttcctgtggtacctttggtgaagggtttttaataatatgattgaggttggtgattc 94  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||    
T  13167012 acaactaccgaaggattgacttcctgtggtacctttggggaagggttttttataatatgattgaggttggagattc 13167087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 443 - 555
Target Start/End: Original strand, 21862238 - 21862352
Alignment:
Q  443 caatttgcttgtttggtgagtcaaattctcacactttggttgtttggtgag-catgtgctcacaatttggtttcttcttccca--tttgattcttcaatt 539  Q
    ||||||| |||||||||||||| |  ||||||| ||||||||||||||||| |  ||||||||||||||||||||||| |||   |||||||||||||||    
T  21862238 caatttggttgtttggtgagtctagctctcaca-tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcccccattttgattcttcaatt 21862336  T
Q  540 tagttgtttggtgagt 555  Q
    | ||||||||||||||    
T  21862337 tggttgtttggtgagt 21862352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 497 - 571
Target Start/End: Original strand, 13167537 - 13167612
Alignment:
Q  497 gtgctcacaatttggtttcttcttcccatt-tgattcttcaatttagttgtttggtgagtaaagttctcacatttg 571  Q
    ||||||||| ||||||||||||| ||| || |||||||||||||| ||||||||||||||  |||||| |||||||    
T  13167537 gtgctcacagtttggtttcttctcccccttctgattcttcaatttggttgtttggtgagtctagttcttacatttg 13167612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 513
Target Start/End: Original strand, 13097858 - 13097970
Alignment:
Q  405 tcacaattggtttgtttgtttggtggg---tcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgtttggtgag-catgtgc 500  Q
    ||||||||||||||||| |||||| ||   |||| ||||||||| ||| ||||||| |||||| | | ||||||  ||| ||||||| |||| || ||||    
T  13097858 tcacaattggtttgtttctttggttggtgatcaaatgctcacaaattggttgtttgatgagtcgagtgctcacaaattgtttgtttgttgagacaagtgc 13097957  T
Q  501 tcacaatttggtt 513  Q
    |||||||||||||    
T  13097958 tcacaatttggtt 13097970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 568 - 608
Target Start/End: Original strand, 10741529 - 10741569
Alignment:
Q  568 tttggttgttcggtgagtcgagtgttcacaatttggtttct 608  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  10741529 tttggttgttcggtgagtcgagtactcacaatttggtttct 10741569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 562 - 614
Target Start/End: Complemental strand, 28063685 - 28063633
Alignment:
Q  562 ctcacatttggttgttcggtgagtcgagtgttcacaatttggtttcttctccc 614  Q
    |||||| ||||||||| ||||||||  ||| ||||||||||||||||||||||    
T  28063685 ctcacaattggttgtttggtgagtcaggtgctcacaatttggtttcttctccc 28063633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 483
Target Start/End: Original strand, 10741471 - 10741566
Alignment:
Q  388 gtgagtcaacataatgctcacaattggtttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggtt 483  Q
    ||||||||| ||| || |||||||| ||||||||||||||||||||| |||    || |||| ||||| |||||||| | | |||||| |||||||    
T  10741471 gtgagtcaagatagtgttcacaatttgtttgtttgtttggtgggtcaggtgtgagcactttggttgttcggtgagtcgagtactcacaatttggtt 10741566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 482
Target Start/End: Original strand, 21862332 - 21862371
Alignment:
Q  443 caatttgcttgtttggtgagtcaaattctcacactttggt 482  Q
    ||||||| |||||||||||||| |||||||||||||||||    
T  21862332 caatttggttgtttggtgagtctaattctcacactttggt 21862371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 624
Target Start/End: Original strand, 21862056 - 21862137
Alignment:
Q  543 ttgtttggtgagtaaagttctcacattt-ggttgttcggtgagtcgagtgttcacaatttggtttcttctccccctatgattc 624  Q
    |||||||||||||  | ||||||||||| ||||||| | |||| || ||| ||||||||||||||||||||||| | ||||||    
T  21862056 ttgtttggtgagtcgaattctcacattttggttgtttgttgag-cgtgtgctcacaatttggtttcttctccccttttgattc 21862137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 420 - 488
Target Start/End: Original strand, 13097907 - 13097975
Alignment:
Q  420 ttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgtttg 488  Q
    ||||||| || ||| ||||||||||| ||| ||||||| |||| ||| | |||||| ||||||||||||    
T  13097907 ttgtttgatgagtcgagtgctcacaaattgtttgtttgttgagacaagtgctcacaatttggttgtttg 13097975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 237 - 277
Target Start/End: Original strand, 13167229 - 13167269
Alignment:
Q  237 atgtttgtctatgcttgctttggttcagcttgtcttggttc 277  Q
    |||||||||| || ||||||||| |||||||||||||||||    
T  13167229 atgtttgtctctggttgctttgggtcagcttgtcttggttc 13167269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 128; Significance: 7e-66; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 415 - 615
Target Start/End: Original strand, 16870623 - 16870825
Alignment:
Q  415 tttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgtttggtgagcatgtgctcacaatttggttt 514  Q
    ||||||||||||||||||||||  |||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  16870623 tttgtttgtttggtgggtcaagaactcataatttgcttgtttggtgagtcgatttctcacactttggttgtttggtgagcatgtgctcacaatttggttt 16870722  T
Q  515 cttcttcccatttg--attcttcaatttagttgtttggtgagtaaagttctcacatttggttgttcggtgagtcgagtgttcacaatttggtttcttctc 612  Q
    ||||| ||| ||||  |||||||||||| |||| || |||||| ||||||| |||||||||||||  |||||||||||| ||| ||||||||||||||||    
T  16870723 cttctccccttttgatattcttcaatttggttgattagtgagtcaagttcttacatttggttgtttcgtgagtcgagtgctcataatttggtttcttctc 16870822  T
Q  613 ccc 615  Q
    |||    
T  16870823 ccc 16870825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 402 - 493
Target Start/End: Original strand, 54147638 - 54147729
Alignment:
Q  402 tgctcacaattggtttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgtttggtgag 493  Q
    ||||||| ||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||  | |||||||||| |||||||||||||    
T  54147638 tgctcactattggattgtttgtttggtgggtcaagtgctcataatttgtttgtttggtgagtcaggtgctcacactttagttgtttggtgag 54147729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 415 - 535
Target Start/End: Original strand, 54147682 - 54147803
Alignment:
Q  415 tttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgtttggtgagcat-gtgctcacaatttggtt 513  Q
    ||||||||||||||| |||| ||||||||| |||  |||||||||||||| | |||||||| |||||||||||||||||  | |||||||||||||||||    
T  54147682 tttgtttgtttggtgagtcaggtgctcacactttagttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtt 54147781  T
Q  514 tcttcttcccatttgattcttc 535  Q
    ||||   ||| |||||||||||    
T  54147782 tctttcccccttttgattcttc 54147803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 388 - 505
Target Start/End: Original strand, 54147589 - 54147711
Alignment:
Q  388 gtgagtcaacataatgctcacaattggtttgtttgtttggtgggtcaagtgctcacaat----ttgcttgtttggtgagtcaaattctcacactttggtt 483  Q
    ||||||||| ||| | ||||||||||||||||||||||||| |||||||||||||| ||    ||| |||||||||| ||||| | |||| | |||| ||    
T  54147589 gtgagtcaagatagtcctcacaattggtttgtttgtttggtaggtcaagtgctcactattggattgtttgtttggtgggtcaagtgctcataatttgttt 54147688  T
Q  484 gtttggtgag-catgtgctcaca 505  Q
    |||||||||| || |||||||||    
T  54147689 gtttggtgagtcaggtgctcaca 54147711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 569 - 625
Target Start/End: Original strand, 54147869 - 54147925
Alignment:
Q  569 ttggttgttcggtgagtcgagtgttcacaatttggtttcttctccccctatgattct 625  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||| | |||||||    
T  54147869 ttggttgtttggtgagtcgagtgctcacaatttggtttcttctccccttttgattct 54147925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 497 - 555
Target Start/End: Original strand, 54147827 - 54147885
Alignment:
Q  497 gtgctcacaatttggtttcttcttcccatttgattcttcaatttagttgtttggtgagt 555  Q
    ||||||| ||||||||||||||| ||| ||||||||||||| || ||||||||||||||    
T  54147827 gtgctcataatttggtttcttctccccttttgattcttcaagttggttgtttggtgagt 54147885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 538 - 609
Target Start/End: Original strand, 54147713 - 54147785
Alignment:
Q  538 tttagttgtttggtgagtaaagttctcaca-tttggttgttcggtgagtcgagtgttcacaatttggtttctt 609  Q
    ||||||||||||||||||  |||||||||| |||||||||| |||||||   ||| |||||||||||||||||    
T  54147713 tttagttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttctt 54147785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 512
Target Start/End: Original strand, 42265396 - 42265492
Alignment:
Q  415 tttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgtttggtga-gcatgtgctcacaatttggt 512  Q
    |||| ||||||||||  ||||||||||||  |||| ||||||||||||||  | ||||||| ||||||||||||||||  || ||||||||||||||||    
T  42265396 tttggttgtttggtga-tcaagtgctcactgtttggttgtttggtgagtc-gagtctcacaatttggttgtttggtgattcaagtgctcacaatttggt 42265492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 478 - 535
Target Start/End: Original strand, 54147869 - 54147927
Alignment:
Q  478 ttggttgtttggtgag-catgtgctcacaatttggtttcttcttcccatttgattcttc 535  Q
    |||||||||||||||| |  ||||||||||||||||||||||| ||| |||||||||||    
T  54147869 ttggttgtttggtgagtcgagtgctcacaatttggtttcttctccccttttgattcttc 54147927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 398 - 488
Target Start/End: Original strand, 24225457 - 24225551
Alignment:
Q  398 ataatgctcacaattggtttgtttgtttggtgggt----caagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgtttg 488  Q
    |||||||||||||||||||| ||||||| || |||    ||||| ||||||||||| ||||||||||| || | | || ||| ||||||||||||    
T  24225457 ataatgctcacaattggtttatttgttttgttggtgactcaagtactcacaatttggttgtttggtgaatcgagtgcttacaatttggttgtttg 24225551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 414 - 488
Target Start/End: Original strand, 42265425 - 42265498
Alignment:
Q  414 gtttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgtttg 488  Q
    ||||| |||||||||| ||| ||| ||||||||||| ||||||||||| |||| | |||||| |||||| |||||    
T  42265425 gtttggttgtttggtgagtcgagt-ctcacaatttggttgtttggtgattcaagtgctcacaatttggtggtttg 42265498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 573 - 625
Target Start/End: Original strand, 54147811 - 54147863
Alignment:
Q  573 ttgttcggtgagtcgagtgttcacaatttggtttcttctccccctatgattct 625  Q
    ||||| |||| |||||||| ||| ||||||||||||||||||| | |||||||    
T  54147811 ttgtttggtgggtcgagtgctcataatttggtttcttctccccttttgattct 54147863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 2e-60; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 443 - 617
Target Start/End: Original strand, 20242053 - 20242227
Alignment:
Q  443 caatttgcttgtttggtgagtcaaattctcacactttggttgtttggtgagcatgtgctcacaatttggtttcttcttcccatttgattcttcaatttag 542  Q
    ||||||| | |||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||| |    
T  20242053 caatttggtggtttggtgagtcgagttctcacactttggttgtttggtgagcgtgtgctcacaatttggtttcttctccccttttgattcttcaatttgg 20242152  T
Q  543 ttgtttggtgagtaaagttctcacatttggttgttcggtgagtcgagtgttcacaatttggtttcttctccccct 617  Q
    |||||||||||||| |||||||||||||||||||  ||||||| | ||| |||||||||||||||||||||||||    
T  20242153 ttgtttggtgagtagagttctcacatttggttgtctggtgagtagtgtgctcacaatttggtttcttctccccct 20242227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 388 - 625
Target Start/End: Original strand, 20241903 - 20242143
Alignment:
Q  388 gtgagtcaacataatgctcacaattggtttgtt----tgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggtt 483  Q
    ||||||||| ||| ||||||||||| |||||||    |||||||||||||| |  |||| ||||||||||||||||||||| | |||||||| |||||||    
T  20241903 gtgagtcaaaatagtgctcacaattagtttgttcgtttgtttggtgggtca-gcactcataatttgcttgtttggtgagtcgagttctcacattttggtt 20242001  T
Q  484 gtttggtgagcatgtgctcacaatttggtttcttcttcccatttgattcttcaatttagttgtttggtgagtaaagttctcaca-tttggttgttcggtg 582  Q
    ||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||| || |||||||||||  |||||||||| |||||||||| ||||    
T  20242002 gtttggtgagcgtgtgctcacaatttggtttcttctccccttttgattcttcaatttggtggtttggtgagtcgagttctcacactttggttgtttggtg 20242101  T
Q  583 agtcgagtgttcacaatttggtttcttctccccctatgattct 625  Q
    || || ||| ||||||||||||||||||||||| | |||||||    
T  20242102 ag-cgtgtgctcacaatttggtttcttctccccttttgattct 20242143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 388 - 625
Target Start/End: Complemental strand, 20251164 - 20250924
Alignment:
Q  388 gtgagtcaacataatgctcacaattggtttgtt----tgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggtt 483  Q
    ||||||||| ||| ||||||||||| |||||||    |||||||||||||| |  |||| ||||||||||||||||||||| | |||||||| |||||||    
T  20251164 gtgagtcaaaatagtgctcacaattagtttgttcgtttgtttggtgggtca-gcactcataatttgcttgtttggtgagtcgagttctcacattttggtt 20251066  T
Q  484 gtttggtgagcatgtgctcacaatttggtttcttcttcccatttgattcttcaatttagttgtttggtgagtaaagttctcaca-tttggttgttcggtg 582  Q
    ||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||| || |||||||||||  |||||||||| |||||||||| ||||    
T  20251065 gtttggtgagcgtgtgctcacaatttggtttcttctccccttttgattcttcaatttggtggtttggtgagtcgagttctcacactttggttgtttggtg 20250966  T
Q  583 agtcgagtgttcacaatttggtttcttctccccctatgattct 625  Q
    || || ||| ||||||||||||||||||||||| | |||||||    
T  20250965 ag-cgtgtgctcacaatttggtttcttctccccttttgattct 20250924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 443 - 540
Target Start/End: Complemental strand, 20251014 - 20250917
Alignment:
Q  443 caatttgcttgtttggtgagtcaaattctcacactttggttgtttggtgagcatgtgctcacaatttggtttcttcttcccatttgattcttcaattt 540  Q
    ||||||| | |||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||    
T  20251014 caatttggtggtttggtgagtcgagttctcacactttggttgtttggtgagcgtgtgctcacaatttggtttcttctccccttttgattcttcaattt 20250917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 2e-60; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 443 - 617
Target Start/End: Original strand, 44338376 - 44338550
Alignment:
Q  443 caatttgcttgtttggtgagtcaaattctcacactttggttgtttggtgagcatgtgctcacaatttggtttcttcttcccatttgattcttcaatttag 542  Q
    ||||||| | |||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||| |    
T  44338376 caatttggtggtttggtgagtcgagttctcacactttggttgtttggtgagcgtgtgctcacaatttggtttcttctccccttttgattcttcaatttgg 44338475  T
Q  543 ttgtttggtgagtaaagttctcacatttggttgttcggtgagtcgagtgttcacaatttggtttcttctccccct 617  Q
    |||||||||||||| |||||||||||||||||||  ||||||| | ||| |||||||||||||||||||||||||    
T  44338476 ttgtttggtgagtagagttctcacatttggttgtctggtgagtagtgtgctcacaatttggtttcttctccccct 44338550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 388 - 625
Target Start/End: Original strand, 44338226 - 44338466
Alignment:
Q  388 gtgagtcaacataatgctcacaattggtttgtt----tgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggtt 483  Q
    ||||||||| ||| ||||||||||| |||||||    |||||||||||||| |  |||| ||||||||||||||||||||| | |||||||| |||||||    
T  44338226 gtgagtcaaaatagtgctcacaattagtttgttcgtttgtttggtgggtca-gcactcataatttgcttgtttggtgagtcgagttctcacattttggtt 44338324  T
Q  484 gtttggtgagcatgtgctcacaatttggtttcttcttcccatttgattcttcaatttagttgtttggtgagtaaagttctcaca-tttggttgttcggtg 582  Q
    ||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||| || |||||||||||  |||||||||| |||||||||| ||||    
T  44338325 gtttggtgagcgtgtgctcacaatttggtttcttctccccttttgattcttcaatttggtggtttggtgagtcgagttctcacactttggttgtttggtg 44338424  T
Q  583 agtcgagtgttcacaatttggtttcttctccccctatgattct 625  Q
    || || ||| ||||||||||||||||||||||| | |||||||    
T  44338425 ag-cgtgtgctcacaatttggtttcttctccccttttgattct 44338466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 415 - 535
Target Start/End: Complemental strand, 46963918 - 46963798
Alignment:
Q  415 tttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgtttggtgagcatgtgctcacaatttggttt 514  Q
    ||||||||||||||||||||||  |||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  46963918 tttgtttgtttggtgggtcaagaactcataatttgcttgtttggtgagtcgatttctcacactttggttgtttggtgagcatgtgctcacaatttggttt 46963819  T
Q  515 cttcttcccatttgattcttc 535  Q
    ||||| ||| ||| |||||||    
T  46963818 cttctcccctttttattcttc 46963798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 443 - 618
Target Start/End: Complemental strand, 15623270 - 15623094
Alignment:
Q  443 caatttgcttgtttggtgagtcaaattctcacactttggttgtttggtgagcat-gtgctcacaatttggtttcttcttcccattt-gattcttcaattt 540  Q
    ||||||| |||||||||||||| | |||||||| |||| ||||||||||||    ||||||||||||| ||||||||| ||| |   |||||||||||||    
T  15623270 caatttggttgtttggtgagtctagttctcaca-tttgattgtttggtgagttgagtgctcacaattttgtttcttctccccctaccgattcttcaattt 15623172  T
Q  541 agttgtttggtgagtaaagttctcacatttggttgttcggtgagtcgagtgttcacaatttggtttcttctcccccta 618  Q
     ||||||||||||||  |||||||||||||||||||| ||||||| ||||| ||||||||| ||||||||||||||||    
T  15623171 ggttgtttggtgagtctagttctcacatttggttgtttggtgagttgagtgctcacaattttgtttcttctcccccta 15623094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 443 - 610
Target Start/End: Complemental strand, 15623177 - 15623009
Alignment:
Q  443 caatttgcttgtttggtgagtcaaattctcacactttggttgtttggtgagcat-gtgctcacaatttggtttcttcttcccatt-tgattcttcaattt 540  Q
    ||||||| |||||||||||||| | |||||||| |||||||||||||||||    ||||||||||||| ||||||||| ||| |  ||||||||||||||    
T  15623177 caatttggttgtttggtgagtctagttctcaca-tttggttgtttggtgagttgagtgctcacaattttgtttcttctccccctactgattcttcaattt 15623079  T
Q  541 agttgtttggtgagtaaagttctcacatttggttgttcggtgagtcgagtgttcacaatttggtttcttc 610  Q
     ||||||||||||||  |||||||||||||||||||| ||||||||| ||| |||| ||| |||||||||    
T  15623078 ggttgtttggtgagtctagttctcacatttggttgtttggtgagtcgtgtgctcacgattcggtttcttc 15623009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 500 - 618
Target Start/End: Complemental strand, 15623306 - 15623187
Alignment:
Q  500 ctcacaatttggtttcttcttcccatt-tgattcttcaatttagttgtttggtgagtaaagttctcacatttggttgttcggtgagtcgagtgttcacaa 598  Q
    |||||||||||||||||||| ||| |  || ||||||||||| ||||||||||||||  |||||||||||||| ||||| ||||||| ||||| ||||||    
T  15623306 ctcacaatttggtttcttctccccgtactggttcttcaatttggttgtttggtgagtctagttctcacatttgattgtttggtgagttgagtgctcacaa 15623207  T
Q  599 tttggtttcttctcccccta 618  Q
    ||| ||||||||||||||||    
T  15623206 ttttgtttcttctcccccta 15623187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 390 - 492
Target Start/End: Original strand, 21813794 - 21813896
Alignment:
Q  390 gagtcaacataatgctcacaattggtttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgtttgg 489  Q
    ||||||| ||| | |||||||||||||| ||||||||||| |||||||||||||| |||| |||||||||||||| | | |||||| |||||||| ||||    
T  21813794 gagtcaagatattcctcacaattggtttatttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggttgcttgg 21813893  T
Q  490 tga 492  Q
    |||    
T  21813894 tga 21813896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 415 - 519
Target Start/End: Complemental strand, 11828677 - 11828572
Alignment:
Q  415 tttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgtttggtgag-catgtgctcacaatttggtt 513  Q
    |||||| |||||||||||||||||||||||||||| |||| |||||||||   | |||||| |||||||||||||||||  | || ||||||||||||||    
T  11828677 tttgttagtttggtgggtcaagtgctcacaatttggttgtctggtgagtcgggtgctcacattttggttgtttggtgagttaagtactcacaatttggtt 11828578  T
Q  514 tcttct 519  Q
    ||||||    
T  11828577 tcttct 11828572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 405 - 480
Target Start/End: Complemental strand, 24487162 - 24487088
Alignment:
Q  405 tcacaattggtttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttg 480  Q
    |||||||| |||||||||||||||| || ||||| |||||||||| |||||||||||||||| |||||||| ||||    
T  24487162 tcacaatttgtttgtttgtttggtgagt-aagtgttcacaatttggttgtttggtgagtcaagttctcacaatttg 24487088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 538 - 605
Target Start/End: Original strand, 21813819 - 21813887
Alignment:
Q  538 tttagttgtttggtgagtaaagttctcaca-tttggttgttcggtgagtcgagtgttcacaatttggtt 605  Q
    |||| ||||||||||||| |||| |||||| |||||||||| ||||||||||||| |||||||||||||    
T  21813819 tttatttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggtt 21813887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 451 - 513
Target Start/End: Original strand, 21813824 - 21813887
Alignment:
Q  451 ttgtttggtgagtcaaattctcacactttggttgtttggtgag-catgtgctcacaatttggtt 513  Q
    |||||||||||||||| | |||||||||||||||||||||||| |  |||||||||||||||||    
T  21813824 ttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggtt 21813887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 388 - 461
Target Start/End: Original strand, 6530574 - 6530647
Alignment:
Q  388 gtgagtcaacataatgctcacaattggtttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtga 461  Q
    ||||||||| ||| |  ||||||||||||||| ||||||||| ||||| || |||||||||| |||||||||||    
T  6530574 gtgagtcaagatagtattcacaattggtttgtctgtttggtgagtcaaatgttcacaatttggttgtttggtga 6530647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 513
Target Start/End: Complemental strand, 11828688 - 11828609
Alignment:
Q  435 agtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgtttggtgag-catgtgctcacaatttggtt 513  Q
    ||||||||||||||| | |||||||| ||||| | |||||| ||||||||| ||||||| |  ||||||||| |||||||    
T  11828688 agtgctcacaatttgttagtttggtgggtcaagtgctcacaatttggttgtctggtgagtcgggtgctcacattttggtt 11828609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 615
Target Start/End: Complemental strand, 46963882 - 46963810
Alignment:
Q  543 ttgtttggtgagtaaagttctcaca-tttggttgttcggtgagtcgagtgttcacaatttggtttcttctcccc 615  Q
    |||||||||||||  | |||||||| |||||||||| |||||| |  ||| |||||||||||||||||||||||    
T  46963882 ttgtttggtgagtcgatttctcacactttggttgtttggtgag-catgtgctcacaatttggtttcttctcccc 46963810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 452 - 492
Target Start/End: Original strand, 6530607 - 6530647
Alignment:
Q  452 tgtttggtgagtcaaattctcacactttggttgtttggtga 492  Q
    |||||||||||||||||  ||||| ||||||||||||||||    
T  6530607 tgtttggtgagtcaaatgttcacaatttggttgtttggtga 6530647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 6e-54; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 451 - 625
Target Start/End: Complemental strand, 15630107 - 15629932
Alignment:
Q  451 ttgtttggtgagtcaaattctcacactttggttgtttggtgag-catgtgctcacaatttggtttcttcttcccatttgattcttcaatttagttgtttg 549  Q
    |||||||||||||| | | |||||||||||||||||||||||| |  ||||||||||||||||||||||| ||| |||||||||||||||| |||||||     
T  15630107 ttgtttggtgagtcgagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggtttcttctccccttttgattcttcaatttggttgttta 15630008  T
Q  550 gtgagtaaagttctcacatttggttgttcggtgagtcgagtgttcacaatttggtttcttctccccctatgattct 625  Q
    ||||||  | |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||    
T  15630007 gtgagtctaattctcacatttggttgtttggtgagtcgagtgctcacaatttggtttcttctccccttatgattct 15629932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 388 - 493
Target Start/End: Complemental strand, 19825215 - 19825107
Alignment:
Q  388 gtgagtcaacataatgctcacaattggtttgtttgtttggtgggtca---agtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttg 484  Q
    ||||||||| ||||||||||||||| ||||||||||||||| ||| |   ||||||||||||||| |||||||| ||||| | | |||||| ||||||||    
T  19825215 gtgagtcaagataatgctcacaatttgtttgtttgtttggttggtgagtaagtgctcacaatttggttgtttggcgagtcgagtgctcacaatttggttg 19825116  T
Q  485 tttggtgag 493  Q
    |||||||||    
T  19825115 tttggtgag 19825107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 388 - 523
Target Start/End: Complemental strand, 2072498 - 2072359
Alignment:
Q  388 gtgagtcaacataatgctcacaattggtttgtttgtttggtgggtca---agtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttg 484  Q
    ||||||||| |||  |||||| ||||||||| |||||||||||||     | ||||||||||||| ||||||| |||||| | | |||| ||||||||||    
T  2072498 gtgagtcaagatagggctcaccattggtttgattgtttggtgggtgggtgattgctcacaatttgattgtttgatgagtcgagtgctcatactttggttg 2072399  T
Q  485 tttggtgag-catgtgctcacaatttggtttcttcttccc 523  Q
    |||||||||  |||| ||||||||||||||||| ||||||    
T  2072398 tttggtgagttatgtactcacaatttggtttctccttccc 2072359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 443 - 535
Target Start/End: Complemental strand, 15630022 - 15629930
Alignment:
Q  443 caatttgcttgtttggtgagtcaaattctcacactttggttgtttggtgag-catgtgctcacaatttggtttcttcttcccatttgattcttc 535  Q
    ||||||| |||||| ||||||| |||||||||| ||||||||||||||||| |  ||||||||||||||||||||||| ||| | |||||||||    
T  15630022 caatttggttgtttagtgagtctaattctcaca-tttggttgtttggtgagtcgagtgctcacaatttggtttcttctccccttatgattcttc 15629930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 388 - 523
Target Start/End: Complemental strand, 2076028 - 2075889
Alignment:
Q  388 gtgagtcaacataatgctcacaattggtttgtttgtttggtgggtca---agtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttg 484  Q
    ||||||||| |||  |||||| ||||||||  |||||||||||||     | ||||||||||||| |||||||  ||||| | | |||| ||||||||||    
T  2076028 gtgagtcaagatagggctcaccattggtttaattgtttggtgggtgggtgattgctcacaatttggttgtttgacgagtcgagtgctcatactttggttg 2075929  T
Q  485 tttggtgag-catgtgctcacaatttggtttcttcttccc 523  Q
    |||||||||  |||| ||||||||||||||||| ||||||    
T  2075928 tttggtgagttatgtactcacaatttggtttctccttccc 2075889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 419 - 483
Target Start/End: Complemental strand, 15630108 - 15630044
Alignment:
Q  419 tttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggtt 483  Q
    ||||||||||| ||| |||||||||| |||| |||||||||||||| | | |||||| |||||||    
T  15630108 tttgtttggtgagtcgagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggtt 15630044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 415 - 463
Target Start/End: Complemental strand, 19825154 - 19825106
Alignment:
Q  415 tttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagt 463  Q
    |||| |||||||| | ||| ||||||||||||||| |||||||||||||    
T  19825154 tttggttgtttggcgagtcgagtgctcacaatttggttgtttggtgagt 19825106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 4e-49; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 439 - 611
Target Start/End: Complemental strand, 46692141 - 46691967
Alignment:
Q  439 ctcacaatttgcttgtttggtgagtcaaattctcacactttggttgtttggtgag-catgtgctcacaatttggtttcttct-tcccatttgattcttca 536  Q
    ||||||||||| |||||||||||||| |||||||||| ||| ||||||||||||| |  ||||||||||||||||||||||| |||| ||||||||||||    
T  46692141 ctcacaatttggttgtttggtgagtctaattctcaca-tttagttgtttggtgagtcgagtgctcacaatttggtttcttctctcccttttgattcttca 46692043  T
Q  537 atttagttgtttggtgagtaaagttctcacatttggttg-ttcggtgagtcgagtgttcacaatttggtttcttct 611  Q
    |||| || |||||||||||  |||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  46692042 atttggtggtttggtgagtctagttctcacatttggttgttttggtgagtcgagtgttcacaatttggtttcttct 46691967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 444 - 535
Target Start/End: Original strand, 42530734 - 42530825
Alignment:
Q  444 aatttgcttgtttggtgagtcaaattctcacactttggttgtttggtgagcatgtgctcacaatttggtttcttcttcccatttgattcttc 535  Q
    |||||| |||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||    
T  42530734 aatttggttgtttggtgagtcgagttctcacactttggttgtttggtgagcgtgtgctcacaatttggtttcttctccccttttgattcttc 42530825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 406 - 493
Target Start/End: Original strand, 50295517 - 50295604
Alignment:
Q  406 cacaattggtttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgtttggtgag 493  Q
    ||||||| | |||||||||| ||||||||||||||||||||||| |||||| ||||||| | | ||||||||| ||||||||||||||    
T  50295517 cacaatttgattgtttgtttagtgggtcaagtgctcacaatttggttgtttcgtgagtcgagtgctcacacttgggttgtttggtgag 50295604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 535 - 617
Target Start/End: Complemental strand, 46692137 - 46692055
Alignment:
Q  535 caatttagttgtttggtgagtaaagttctcacatttggttgttcggtgagtcgagtgttcacaatttggtttcttctccccct 617  Q
    |||||| ||||||||||||||  | ||||||||||| |||||| ||||||||||||| |||||||||||||||||||| ||||    
T  46692137 caatttggttgtttggtgagtctaattctcacatttagttgtttggtgagtcgagtgctcacaatttggtttcttctctccct 46692055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 525 - 625
Target Start/End: Original strand, 42530723 - 42530823
Alignment:
Q  525 tttgattcttcaatttagttgtttggtgagtaaagttctcaca-tttggttgttcggtgagtcgagtgttcacaatttggtttcttctccccctatgatt 623  Q
    |||||||||| ||||| ||||||||||||||  |||||||||| |||||||||| |||||| || ||| ||||||||||||||||||||||| | |||||    
T  42530723 tttgattctttaatttggttgtttggtgagtcgagttctcacactttggttgtttggtgag-cgtgtgctcacaatttggtttcttctccccttttgatt 42530821  T
Q  624 ct 625  Q
    ||    
T  42530822 ct 42530823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 460
Target Start/End: Complemental strand, 2593589 - 2593544
Alignment:
Q  415 tttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtg 460  Q
    |||||||||||| || ||||||||||||||||||| || |||||||    
T  2593589 tttgtttgtttgatgagtcaagtgctcacaatttgtttctttggtg 2593544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 519
Target Start/End: Original strand, 50295557 - 50295662
Alignment:
Q  415 tttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgtttggtgag-catgtgctcacaatttggtt 513  Q
    |||| |||||| ||| ||| |||||||||| || | |||||||||||||  | |||||  |||||| ||||||||||||  | || |||| |||||||||    
T  50295557 tttggttgtttcgtgagtcgagtgctcacacttgggttgtttggtgagttgagttctcgtactttgattgtttggtgagttaagtactcataatttggtt 50295656  T
Q  514 tcttct 519  Q
    ||||||    
T  50295657 tcttct 50295662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 431 - 510
Target Start/End: Complemental strand, 2593665 - 2593586
Alignment:
Q  431 gtcaagtgctcacaatttgcttgtttggtg-agtcaaattctcacactttggttgtttggtgagcatgtgctcacaatttg 510  Q
    ||||||||||||||||||| |||||||| | |||||| | |||||| ||| ||| |||||||||  |||||||| ||||||    
T  2593665 gtcaagtgctcacaatttggttgtttggggaagtcaagtgctcacaattt-gttctttggtgagtttgtgctcataatttg 2593586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 50295343 - 50295379
Alignment:
Q  237 atgtttgtctatgcttgctttggttcagcttgtcttg 273  Q
    |||| |||||||| |||||||||||||||||||||||    
T  50295343 atgtctgtctatggttgctttggttcagcttgtcttg 50295379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 415 - 617
Target Start/End: Complemental strand, 1173589 - 1173386
Alignment:
Q  415 tttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgtttggtgagcat-gtgctcacaatttggtt 513  Q
    |||| |||||||||| ||| ||||||||||  ||| ||||||||||||| ||   ||||||||||||||||||||||||  | |||||||||||||||||    
T  1173589 tttggttgtttggtgagtctagtgctcacatgttgtttgtttggtgagt-aagcgctcacactttggttgtttggtgagtctagtgctcacaatttggtt 1173491  T
Q  514 tcttctt-cccatttgattcttcaatttagttgtttggtgagtaaagttctcacatttggttgttcggtgagtcgagtgttcacaatttggtttcttctc 612  Q
    ||||||  ||| |||||||||||||||| ||||||||||||||  | |||||||||||||||||| |||||||| ||||  |||||||||||||||||||    
T  1173490 tcttctcgcccttttgattcttcaatttggttgtttggtgagtctaattctcacatttggttgtttggtgagtctagtgcacacaatttggtttcttctc 1173391  T
Q  613 cccct 617  Q
    |||||    
T  1173390 cccct 1173386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 443 - 617
Target Start/End: Complemental strand, 1173468 - 1173293
Alignment:
Q  443 caatttgcttgtttggtgagtcaaattctcacactttggttgtttggtgagcat-gtgctcacaatttggtttcttcttcccattt-gattcttcaattt 540  Q
    ||||||| |||||||||||||| |||||||||| |||||||||||||||||  | |||| |||||||||||||||||| ||| ||| |||| ||||||||    
T  1173468 caatttggttgtttggtgagtctaattctcaca-tttggttgtttggtgagtctagtgcacacaatttggtttcttctcccccttttgattattcaattt 1173370  T
Q  541 agttgtttggtgagtaaagttctcacatttggttgttcggtgagtcgagtgttcacaatttggtttcttctccccct 617  Q
     ||||||||||||||  |||||||||||||| |||||  |||||||||||| |||||||||||||||||||||||||    
T  1173369 ggttgtttggtgagtctagttctcacatttgattgtttagtgagtcgagtgctcacaatttggtttcttctccccct 1173293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 415 - 517
Target Start/End: Original strand, 8986185 - 8986287
Alignment:
Q  415 tttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgtttggtgagcatgtgctcacaatttggttt 514  Q
    ||||||||||||||||||||||  |||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  8986185 tttgtttgtttggtgggtcaagaactcataatttgcttgtttggtgagtcgatttctcacactttggttgtttggtgagcatgtgctcacaatttggttt 8986284  T
Q  515 ctt 517  Q
    |||    
T  8986285 ctt 8986287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 402 - 493
Target Start/End: Complemental strand, 38584217 - 38584126
Alignment:
Q  402 tgctcacaattggtttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgtttggtgag 493  Q
    |||||||| || | ||||||| |||||| ||||||||||||||||||| | ||||||||||| || | |||||| |||||||||||||||||    
T  38584217 tgctcacattttggttgtttggttggtgagtcaagtgctcacaatttggtagtttggtgagttaagtgctcacaatttggttgtttggtgag 38584126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 415 - 493
Target Start/End: Complemental strand, 1173651 - 1173573
Alignment:
Q  415 tttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgtttggtgag 493  Q
    ||||||||||||||||||| |||||||| |||||| |||||||||||||| | | |||| | |||||||||||||||||    
T  1173651 tttgtttgtttggtgggtcgagtgctcataatttgtttgtttggtgagtcgagtactcatattttggttgtttggtgag 1173573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 414 - 493
Target Start/End: Complemental strand, 1173683 - 1173604
Alignment:
Q  414 gtttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgtttggtgag 493  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||| ||| | | |||| | |||| ||||||||||||    
T  1173683 gtttgtttgtttggtgggtcaagtgctcataatttgtttgtttggtgggtcgagtgctcataatttgtttgtttggtgag 1173604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 402 - 464
Target Start/End: Original strand, 32290583 - 32290645
Alignment:
Q  402 tgctcacaattggtttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtc 464  Q
    ||||||||||| | || ||| ||||||||||||||||||||||||||| ||||||||||||||    
T  32290583 tgctcacaatttggttatttttttggtgggtcaagtgctcacaatttggttgtttggtgagtc 32290645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 388 - 490
Target Start/End: Complemental strand, 38584301 - 38584195
Alignment:
Q  388 gtgagtcaacataatgctcacaatt-ggtttgtt----tgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggt 482  Q
    ||||||||| ||| ||||||||||| ||||||||    |||||||||||| |||  |||||||||||||||||||||||||| | | |||||| ||||||    
T  38584301 gtgagtcaaaatagtgctcacaatttggtttgttcgtttgtttggtgggt-aagcactcacaatttgcttgtttggtgagtcgagtgctcacattttggt 38584203  T
Q  483 tgtttggt 490  Q
    ||||||||    
T  38584202 tgtttggt 38584195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 415 - 493
Target Start/End: Original strand, 32290561 - 32290643
Alignment:
Q  415 tttgtttgtttggtgggtcaagtgctcacaatttg----cttgtttggtgagtcaaattctcacactttggttgtttggtgag 493  Q
    |||||||||||||||||||||||||||||||||||     || ||||||| ||||| | |||||| |||||||||||||||||    
T  32290561 tttgtttgtttggtgggtcaagtgctcacaatttggttatttttttggtgggtcaagtgctcacaatttggttgtttggtgag 32290643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 513
Target Start/End: Complemental strand, 1173620 - 1173522
Alignment:
Q  415 tttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgtttggtgagcatgtgctcacaatttggtt 513  Q
    ||||||||||||||| ||| ||| |||| | |||| |||||||||||||| | | ||||||  ||| |||||||||||| | | ||||||| |||||||    
T  1173620 tttgtttgtttggtgagtcgagtactcatattttggttgtttggtgagtctagtgctcacatgttgtttgtttggtgagtaagcgctcacactttggtt 1173522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 480
Target Start/End: Complemental strand, 38584166 - 38584108
Alignment:
Q  422 gtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttg 480  Q
    |||||||| || |||||||||||||||| ||||||||||||| |||| |||||| ||||    
T  38584166 gtttggtgagttaagtgctcacaatttggttgtttggtgagttaaatgctcacaatttg 38584108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 513
Target Start/End: Complemental strand, 38584239 - 38584136
Alignment:
Q  415 tttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggt----gagtcaaattctcacactttggttgtttggtgagc-atgtgctcacaattt 509  Q
    |||| |||||||||| ||| |||||||||| |||| |||||||||    ||||||| | |||||| |||||| ||||||||||  | |||||||||||||    
T  38584239 tttgcttgtttggtgagtcgagtgctcacattttggttgtttggttggtgagtcaagtgctcacaatttggtagtttggtgagttaagtgctcacaattt 38584140  T
Q  510 ggtt 513  Q
    ||||    
T  38584139 ggtt 38584136  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 535 - 617
Target Start/End: Complemental strand, 38584176 - 38584093
Alignment:
Q  535 caatttagttgtttggtgagtaaagttctcaca-tttggttgttcggtgagtcgagtgttcacaatttggtttcttctccccct 617  Q
    |||||| || ||||||||||| |||| |||||| |||||||||| |||||||  | || |||||||||| ||| ||||||||||    
T  38584176 caatttggtagtttggtgagttaagtgctcacaatttggttgtttggtgagttaaatgctcacaatttgattttttctccccct 38584093  T

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Target: chr5 (Bit Score: 81; Significance: 8e-38; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 477 - 616
Target Start/End: Original strand, 24136984 - 24137123
Alignment:
Q  477 tttggttgtttggtgagcat-gtgctcacaatttggtttcttcttcccatttgattcttcaatttagttgtttggtgagtaaagttctcacatttggttg 575  Q
    |||||||||||||||||  | || |||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||  ||||||||||||||||||    
T  24136984 tttggttgtttggtgagtctagttctcacaatttggtttcttctccccctttgattcttcaatttggttgtttggtgagtctagttctcacatttggttg 24137083  T
Q  576 ttcggtgagtcgagtgttcacaatttggtttcttctccccc 616  Q
    || ||||||| ||||| |||||||||||||| |||||||||    
T  24137084 tttggtgagttgagtgctcacaatttggttt-ttctccccc 24137123  T

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Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 388 - 625
Target Start/End: Original strand, 24136746 - 24136979
Alignment:
Q  388 gtgagtcaacataatgctcacaattggtttgtt----tgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggtt 483  Q
    ||||||||| ||| |||||||||||||||||||    ||||||||  || |||  |||| |||||||||||| |||||||| | |||||||| | |||||    
T  24136746 gtgagtcaaaatagtgctcacaattggtttgttcgtttgtttggtatgtaaagcactcataatttgcttgttgggtgagtcgagttctcacattatggtt 24136845  T
Q  484 gtttggtgagcatgtgctcacaatttggtttcttcttcccatttgattcttcaatttagttgtttggtgagtaaagttctcac-atttggttgttcggtg 582  Q
    ||||||||||| |||||| ||||||||    |||||     |||||||||||||||| |||||||||||||   | ||||||| ||||||||||| ||||    
T  24136846 gtttggtgagcgtgtgcttacaatttg----cttct-----tttgattcttcaatttggttgtttggtgagccgacttctcacaatttggttgtttggtg 24136936  T
Q  583 agtcgagtgttcacaatttggtttcttctccccctatgattct 625  Q
    ||||||||| ||||||||| |||||||| |||| | |||||||    
T  24136937 agtcgagtgctcacaattttgtttcttccccccttctgattct 24136979  T

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Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 388 - 519
Target Start/End: Complemental strand, 11335517 - 11335387
Alignment:
Q  388 gtgagtcaacataatgctcacaattggtttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgttt 487  Q
    ||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |  || | ||||||||||||||||||    
T  11335517 gtgagtcaagatagtgctcacaattggtttgtttgtttggcgggtcaagtgctcacaatttgtttgtttggtggg--aagtactcacactttggttgttt 11335420  T
Q  488 ggtgag-catgtgctcacaatttggtttcttct 519  Q
    |||||| |   ||||||||||||||||||||||    
T  11335419 ggtgagtcgaatgctcacaatttggtttcttct 11335387  T

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Target: chr5; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 443 - 567
Target Start/End: Original strand, 24136888 - 24137013
Alignment:
Q  443 caatttgcttgtttggtgagtcaaattctcacactttggttgtttggtgag-catgtgctcacaatttggtttcttcttcccatttgattcttcaattta 541  Q
    ||||||| |||||||||||| | | |||||||| ||||||||||||||||| |  ||||||||||||| ||||||||  ||| | ||||||||||||||     
T  24136888 caatttggttgtttggtgagccgacttctcacaatttggttgtttggtgagtcgagtgctcacaattttgtttcttccccccttctgattcttcaatttg 24136987  T
Q  542 gttgtttggtgagtaaagttctcaca 567  Q
    ||||||||||||||  ||||||||||    
T  24136988 gttgtttggtgagtctagttctcaca 24137013  T

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Target: chr5; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 404 - 493
Target Start/End: Original strand, 9511766 - 9511855
Alignment:
Q  404 ctcacaattggtttgtttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgtttggtgag 493  Q
    ||||||||| |||||||||||||||| ||| |||||||||| || | |||||||||||||| | | |||||| |||||||||||||||||    
T  9511766 ctcacaattcgtttgtttgtttggtgagtcgagtgctcacacttcggttgtttggtgagtcgagtgctcacaatttggttgtttggtgag 9511855  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 567 - 625
Target Start/End: Original strand, 24136983 - 24137041
Alignment:
Q  567 atttggttgttcggtgagtcgagtgttcacaatttggtttcttctccccctatgattct 625  Q
    ||||||||||| |||||||| |||  ||||||||||||||||||||||||| |||||||    
T  24136983 atttggttgtttggtgagtctagttctcacaatttggtttcttctccccctttgattct 24137041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 568 - 617
Target Start/End: Complemental strand, 11335430 - 11335381
Alignment:
Q  568 tttggttgttcggtgagtcgagtgttcacaatttggtttcttctccccct 617  Q
    |||||||||| |||||||||| || |||||||||||||||||||||||||    
T  11335430 tttggttgtttggtgagtcgaatgctcacaatttggtttcttctccccct 11335381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 420 - 480
Target Start/End: Original strand, 9511813 - 9511873
Alignment:
Q  420 ttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttg 480  Q
    |||||||||| ||| ||||||||||||||| ||||||||||||| |||| |||||| ||||    
T  9511813 ttgtttggtgagtcgagtgctcacaatttggttgtttggtgagttaaatactcacaatttg 9511873  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 446 - 513
Target Start/End: Original strand, 9511777 - 9511845
Alignment:
Q  446 tttgcttgtttggtgagtcaaattctcacactttggttgtttggtgag-catgtgctcacaatttggtt 513  Q
    |||| |||||||||||||| | | ||||||||| |||||||||||||| |  |||||||||||||||||    
T  9511777 tttgtttgtttggtgagtcgagtgctcacacttcggttgtttggtgagtcgagtgctcacaatttggtt 9511845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 443 - 514
Target Start/End: Original strand, 24137043 - 24137114
Alignment:
Q  443 caatttgcttgtttggtgagtcaaattctcacactttggttgtttggtgag-catgtgctcacaatttggttt 514  Q
    ||||||| |||||||||||||| | |||||||| |||||||||||||||||    ||||||||||||||||||    
T  24137043 caatttggttgtttggtgagtctagttctcaca-tttggttgtttggtgagttgagtgctcacaatttggttt 24137114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 543 - 605
Target Start/End: Original strand, 9511782 - 9511845
Alignment:
Q  543 ttgtttggtgagtaaagttctcacattt-ggttgttcggtgagtcgagtgttcacaatttggtt 605  Q
    |||||||||||||  ||| |||||| || ||||||| ||||||||||||| |||||||||||||    
T  9511782 ttgtttggtgagtcgagtgctcacacttcggttgtttggtgagtcgagtgctcacaatttggtt 9511845  T

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Target: scaffold0499 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 420 - 513
Target Start/End: Complemental strand, 7329 - 7238
Alignment:
Q  420 ttgtttggtgggtcaagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgtttggtgag-catgtgctcacaatttggtt 513  Q
    |||||||||| ||| ||||||||||| ||| ||||||| |||| ||||| |||||| ||   | |||||||||| || |||||||||||||||||    
T  7329 ttgtttggtgagtcgagtgctcacaaattgattgtttgttgagacaaatgctcacaatt---tagtttggtgagtcaggtgctcacaatttggtt 7238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 514
Target Start/End: Complemental strand, 7378 - 7265
Alignment:
Q  405 tcacaattggtttgtttgtttggtgggt---caagtgctcacaatttgcttgtttggtgagtcaaattctcacactttggttgtttggtgag-catgtgc 500  Q
    ||||||||||||||||| |||||| |||   ||| ||||||||| ||| |||||||||||||| | | ||||||  ||| ||||||| |||| ||  |||    
T  7378 tcacaattggtttgtttctttggttggtgatcaaatgctcacaaattggttgtttggtgagtcgagtgctcacaaattgattgtttgttgagacaaatgc 7279  T
Q  501 tcacaatttggttt 514  Q
    ||||||||| ||||    
T  7278 tcacaatttagttt 7265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 405 - 464
Target Start/End: Complemental strand, 155004 - 154941
Alignment:
Q  405 tcacaattggtttgtttgtttggtggg----tcaagtgctcacaatttgcttgtttggtgagtc 464  Q
    |||||||||||||||||||||||| ||    |||| | ||||||||||| ||||||||||||||    
T  155004 tcacaattggtttgtttgtttggttggtaaatcaaattctcacaatttggttgtttggtgagtc 154941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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