View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16471_low_1 (Length: 776)

Name: NF16471_low_1
Description: NF16471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16471_low_1
NF16471_low_1
[»] chr4 (25 HSPs)
chr4 (18-592)||(15034537-15035107)
chr4 (592-766)||(15035149-15035323)
chr4 (35-139)||(50383819-50383923)
chr4 (29-139)||(6017047-6017157)
chr4 (29-139)||(32828146-32828256)
chr4 (29-138)||(1585642-1585750)
chr4 (26-139)||(4728477-4728590)
chr4 (29-139)||(10715585-10715696)
chr4 (29-139)||(10929355-10929466)
chr4 (29-139)||(4552116-4552226)
chr4 (29-138)||(41972512-41972622)
chr4 (26-139)||(25237495-25237608)
chr4 (29-140)||(2017512-2017623)
chr4 (26-141)||(14044274-14044389)
chr4 (26-101)||(46645560-46645635)
chr4 (29-139)||(32005846-32005955)
chr4 (29-96)||(40969198-40969265)
chr4 (35-101)||(2576128-2576194)
chr4 (29-111)||(8901762-8901844)
chr4 (241-303)||(45195701-45195763)
chr4 (29-139)||(52373670-52373779)
chr4 (243-319)||(30918195-30918271)
chr4 (26-84)||(10058511-10058569)
chr4 (29-139)||(31364067-31364176)
chr4 (29-138)||(49744972-49745080)
[»] chr2 (11 HSPs)
chr2 (35-141)||(304203-304309)
chr2 (29-139)||(13203698-13203808)
chr2 (28-101)||(25562892-25562965)
chr2 (26-139)||(34756610-34756723)
chr2 (29-139)||(2475753-2475863)
chr2 (29-139)||(4570554-4570663)
chr2 (29-140)||(41114944-41115055)
chr2 (29-101)||(16221076-16221148)
chr2 (35-96)||(22572781-22572842)
chr2 (29-101)||(6799960-6800032)
chr2 (29-96)||(18299217-18299284)
[»] chr1 (21 HSPs)
chr1 (29-139)||(49898345-49898455)
chr1 (29-139)||(25007394-25007504)
chr1 (29-135)||(33169357-33169462)
chr1 (26-139)||(14727248-14727361)
chr1 (35-139)||(4773937-4774041)
chr1 (29-139)||(6802175-6802284)
chr1 (29-139)||(27460626-27460736)
chr1 (29-139)||(27584088-27584198)
chr1 (36-139)||(24645984-24646086)
chr1 (29-96)||(25011611-25011678)
chr1 (26-140)||(8239209-8239322)
chr1 (29-139)||(37154065-37154175)
chr1 (29-139)||(44305342-44305452)
chr1 (29-138)||(44238934-44239042)
chr1 (29-93)||(9527021-9527085)
chr1 (29-94)||(1428455-1428520)
chr1 (28-96)||(48940502-48940570)
chr1 (29-142)||(11647068-11647180)
chr1 (26-139)||(31844704-31844817)
chr1 (29-96)||(4642145-4642212)
chr1 (26-96)||(33469013-33469083)
[»] chr7 (13 HSPs)
chr7 (27-139)||(41759693-41759804)
chr7 (26-139)||(5991489-5991602)
chr7 (35-142)||(21932859-21932966)
chr7 (26-139)||(35300512-35300625)
chr7 (26-88)||(3012279-3012341)
chr7 (26-136)||(22206758-22206868)
chr7 (26-136)||(22227871-22227981)
chr7 (26-135)||(19377319-19377426)
chr7 (26-139)||(25688262-25688375)
chr7 (26-83)||(7873292-7873349)
chr7 (48-139)||(28694145-28694236)
chr7 (35-139)||(30852275-30852377)
chr7 (37-140)||(815068-815172)
[»] chr5 (23 HSPs)
chr5 (36-141)||(13694764-13694868)
chr5 (26-139)||(16567721-16567834)
chr5 (26-136)||(32953740-32953850)
chr5 (26-139)||(13942855-13942968)
chr5 (29-140)||(34443895-34444006)
chr5 (26-140)||(21068926-21069040)
chr5 (26-139)||(1672559-1672671)
chr5 (26-139)||(43228715-43228827)
chr5 (26-138)||(13694982-13695093)
chr5 (26-140)||(7162156-7162265)
chr5 (26-136)||(9738306-9738415)
chr5 (26-124)||(12267482-12267580)
chr5 (29-139)||(15503847-15503956)
chr5 (29-139)||(30248895-30249005)
chr5 (26-95)||(16667566-16667635)
chr5 (35-139)||(42989463-42989568)
chr5 (26-101)||(17192742-17192817)
chr5 (29-87)||(6900755-6900813)
chr5 (29-139)||(39605902-39606011)
chr5 (29-138)||(2476335-2476444)
chr5 (26-135)||(34846289-34846398)
chr5 (26-139)||(33006824-33006938)
chr5 (26-140)||(37779594-37779707)
[»] chr3 (21 HSPs)
chr3 (27-139)||(41218456-41218568)
chr3 (29-139)||(44047520-44047630)
chr3 (29-139)||(53987800-53987910)
chr3 (29-139)||(25391899-25392009)
chr3 (29-139)||(44625634-44625744)
chr3 (29-139)||(9600287-9600396)
chr3 (35-136)||(33179205-33179306)
chr3 (29-139)||(12909763-12909866)
chr3 (29-96)||(43700229-43700296)
chr3 (27-101)||(7500918-7500992)
chr3 (29-139)||(28311213-28311323)
chr3 (29-139)||(53651835-53651944)
chr3 (29-97)||(47511719-47511787)
chr3 (26-140)||(26278288-26278400)
chr3 (26-136)||(35077151-35077261)
chr3 (26-87)||(37516618-37516679)
chr3 (29-139)||(41199965-41200075)
chr3 (29-101)||(14461039-14461111)
chr3 (27-95)||(41358700-41358768)
chr3 (29-93)||(53068224-53068288)
chr3 (251-368)||(44053401-44053518)
[»] chr8 (12 HSPs)
chr8 (29-138)||(34282972-34283081)
chr8 (29-140)||(38214688-38214799)
chr8 (29-139)||(21138133-21138243)
chr8 (29-136)||(24964966-24965073)
chr8 (26-141)||(36406573-36406688)
chr8 (29-139)||(27321925-27322034)
chr8 (26-140)||(39431746-39431860)
chr8 (26-140)||(8968259-8968373)
chr8 (251-353)||(37325137-37325239)
chr8 (28-87)||(13243064-13243123)
chr8 (35-101)||(28928027-28928093)
chr8 (26-101)||(3384103-3384178)
[»] scaffold0108 (1 HSPs)
scaffold0108 (29-139)||(21075-21183)
[»] scaffold0638 (1 HSPs)
scaffold0638 (26-136)||(4032-4142)
[»] chr6 (12 HSPs)
chr6 (26-140)||(34188720-34188834)
chr6 (29-136)||(34249088-34249195)
chr6 (30-139)||(10397868-10397977)
chr6 (26-139)||(28614455-28614568)
chr6 (29-139)||(5582407-5582516)
chr6 (30-139)||(2960615-2960724)
chr6 (26-95)||(9046999-9047068)
chr6 (29-139)||(23663834-23663944)
chr6 (47-136)||(14939003-14939092)
chr6 (26-87)||(15528917-15528978)
chr6 (26-101)||(9696012-9696087)
chr6 (30-92)||(2836288-2836350)
[»] scaffold0075 (2 HSPs)
scaffold0075 (30-137)||(6843-6950)
scaffold0075 (30-101)||(11493-11563)
[»] scaffold0021 (1 HSPs)
scaffold0021 (26-139)||(109383-109494)


Alignment Details
Target: chr4 (Bit Score: 471; Significance: 0; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 18 - 592
Target Start/End: Original strand, 15034537 - 15035107
Alignment:
Q  18 aaatccatggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||| |||||    
T  15034537 aaatccatggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcttgttacaaagaaagttgaagctgagcttgggctagtgcccaggctag 15034636  T
Q  118 ttggggggtggctccgcccctggctgagatggtgttgcatagcttagtaagctttggtagaattgaattaggtggatttttattgaatggttcagagaat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  15034637 ttggggggtggctccgcccctggctgagatggtgttgcatagcttagtaagctttggtagaattgagttaggtggatttttattgaatggttgagagaat 15034736  T
Q  218 aaggaatggttcagagaatgtgatgactccttgttttcccatcttattgatttcttgcacgctctatgtaatttggattatataatccaaatggcatgaa 317  Q
    ||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  15034737 aaggaatggtttagagaatatgaggactccttgttttcccatcttattgatttcttgcacactctatgtaatttggattatataatccaaatggcatgaa 15034836  T
Q  318 catcccatctaaacctcccaaacatgttaaaacattcaggattttagaatct------ggcatgcgagaaactaataagatgagaaaagtaatggccgaa 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||    
T  15034837 catcccatctaaacctcccaaacatgttaaaacattcaggattttagaatctggacagggcatgcgagaaactaataagatgagaaaagtaatggccgaa 15034936  T
Q  412 tgtgattaagaccaaccgatcaagaaggcccaaattagagaactatgtggggccttaagctggcttaaggacttccatattacagataggagattgcgta 511  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  15034937 tgtgattaagaccaaccaatcaagaaggcccaaattagagaactatgtggggccttaagctggcttaaggacttccatattacagataggagattgcata 15035036  T
Q  512 gtagacacctaacaattgctaacaattgcttacagacatctcaaactactgaaaataccccaacggtagttaactattatt 592  Q
    ||||||||          |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15035037 gtagacac----------ctaacaattgcttacagacacctcaaactactgaaaataccccaacggtagttaactattatt 15035107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 592 - 766
Target Start/End: Original strand, 15035149 - 15035323
Alignment:
Q  592 tatgaacggtagttaactactgtacggagtgtttttattttaggtgtatgtaagca-ttactaggtgcctaaagagcaatctccatacaaatatgcaaac 690  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15035149 tatgaacggtagttaactactgtacggagtgttttt-ttttaggtgtatgtaagcaattactaggtgcctaaagagcaatctccatacaaatatgcaaac 15035247  T
Q  691 tatttccattccattagaatatattccctactattgctatttctaatttttatctttgcacacttacttgcctatg 766  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||    
T  15035248 tatttccattccattagaatatattccctacttttgctatttctcatttttatttttgcacacttacttgcctatg 15035323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 35 - 139
Target Start/End: Complemental strand, 50383923 - 50383819
Alignment:
Q  35 gcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtggctccgc 134  Q
    ||||||||||| ||||||||||||||||| ||||| || |||||||||||||| |||||||| ||||   ||||||| ||||| ||||||||||||||||    
T  50383923 gcaggaaaagctaaaagttctagtaatggctgggcttgctacaaagaaagttggagctgagcctgggccagtgcccaggctagctggggggtggctccgc 50383824  T
Q  135 ccctg 139  Q
    |||||    
T  50383823 ccctg 50383819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 6017157 - 6017047
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| |||| |||||||| ||||||||||||| || |||| || |||||||||||| |||| ||||| |||| | ||||||| ||||| | ||||||||    
T  6017157 aaatccgcagaaaaagcgacaagttctagtaatagtcgggcttgctacaaagaaagtagaagttgagcctgggctagtgcccatgctagctagggggtgg 6017058  T
Q  129 ctccgcccctg 139  Q
    |||||||||||    
T  6017057 ctccgcccctg 6017047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 32828256 - 32828146
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    |||| |||||||||||| ||||||||||||||||||||||  |  |||||||||| ||| |||||||| |||| | ||||||| ||||| |||||  |||    
T  32828256 aaatatgcaggaaaagctaaaagttctagtaatggttgggattactacaaagaaaattggagctgagcctgggctagtgcccaggctagctggggtttgg 32828157  T
Q  129 ctccgcccctg 139  Q
    |||||||||||    
T  32828156 ctccgcccctg 32828146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 29 - 138
Target Start/End: Complemental strand, 1585750 - 1585642
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||||||||||||||| |||| ||||||||||||| |||| || ||||||||||||||||||||||| ||||     ||||| ||||| | ||||||||    
T  1585750 aaatctgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttgaagctgagcctgggcactagcccaggctagct-gggggtgg 1585652  T
Q  129 ctccgcccct 138  Q
    ||||||||||    
T  1585651 ctccgcccct 1585642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 26 - 139
Target Start/End: Complemental strand, 4728590 - 4728477
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttgggggg 125  Q
    |||||||| ||||||||||| |||| |||||||||||||| ||| || |||||||||||||| ||| |||  ||||     ||||||||||| |||||||    
T  4728590 ggtaaatccgcaggaaaagctaaaaattctagtaatggtttggcttgctacaaagaaagttggagccgagtctgggcactagcccaagctagctgggggg 4728491  T
Q  126 tggctccgcccctg 139  Q
    ||||||||||||||    
T  4728490 tggctccgcccctg 4728477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 10715696 - 10715585
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctg-ttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtg 127  Q
    ||||| ||||||||||| |||| |||||||||||||||||| || ||||||||||||||| ||| |||| ||||     ||||| ||||| |||||||||    
T  10715696 aaatccgcaggaaaagctaaaaattctagtaatggttgggcttgcttacaaagaaagttggagccgagcctgggcactagcccaggctagctggggggtg 10715597  T
Q  128 gctccgcccctg 139  Q
    ||||||||||||    
T  10715596 gctccgcccctg 10715585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 10929466 - 10929355
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctg-ttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtg 127  Q
    ||||| ||||||||||| |||| |||||||||||||||||| || ||||||||||||||| ||| |||| ||||     ||||| ||||| |||||||||    
T  10929466 aaatccgcaggaaaagctaaaaattctagtaatggttgggcttgcttacaaagaaagttggagccgagcctgggcactagcccaggctagctggggggtg 10929367  T
Q  128 gctccgcccctg 139  Q
    ||||||||||||    
T  10929366 gctccgcccctg 10929355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 4552226 - 4552116
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||||||||||| |||| ||||||||||||| |||| || |||||||||||||| |||||||| ||||     ||||| ||||| ||||||| ||    
T  4552226 aaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggcactagcccaggctagctggggggggg 4552127  T
Q  129 ctccgcccctg 139  Q
    |||||||||||    
T  4552126 ctccgcccctg 4552116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 29 - 138
Target Start/End: Original strand, 41972512 - 41972622
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctag-ttggggggtg 127  Q
    ||||| ||||||||||| ||||||||||||||||||| ||| || |||||||||||||| |||||||| |  | | |||||||  |||| | ||||||||    
T  41972512 aaatccgcaggaaaagctaaaagttctagtaatggttcggcttgctacaaagaaagttggagctgagcctaagctagtgcccagcctagctgggggggtg 41972611  T
Q  128 gctccgcccct 138  Q
    |||||||||||    
T  41972612 gctccgcccct 41972622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 26 - 139
Target Start/End: Complemental strand, 25237608 - 25237495
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttgggggg 125  Q
    |||||||| |||| ||| || ||||||||||||||||  ||| | |  |||||||||||||| |||||||| |||| | |||| || ||||| |||||||    
T  25237608 ggtaaatccgcagaaaacgctaaaagttctagtaatgactggacttactacaaagaaagttggagctgagcctgggctagtgctcaggctagctgggggg 25237509  T
Q  126 tggctccgcccctg 139  Q
    ||||||||||||||    
T  25237508 tggctccgcccctg 25237495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 140
Target Start/End: Original strand, 2017512 - 2017623
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||||||||||| |||| ||||||||||||| | || || |||||||||||||| |||| ||| ||||     ||||| ||||| ||||||||||    
T  2017512 aaatccgcaggaaaagctaaaaattctagtaatggtagagcttgctacaaagaaagttggagctaagcctgggcactagcccaggctagctggggggtgg 2017611  T
Q  129 ctccgcccctgg 140  Q
    ||||||||||||    
T  2017612 ctccgcccctgg 2017623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 141
Target Start/End: Complemental strand, 14044389 - 14044274
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttgggggg 125  Q
    |||||||| ||||||||||| |||| || | ||||||| | ||| || |||||||||| ||| |||||||  || | | |||||||| |||| |||||||    
T  14044389 ggtaaatccgcaggaaaagctaaaaattttcgtaatggcttggcttgctacaaagaaaattggagctgagactgagctagtgcccaaactagctgggggg 14044290  T
Q  126 tggctccgcccctggc 141  Q
    ||||||||||| ||||    
T  14044289 tggctccgcccttggc 14044274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 46645635 - 46645560
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttggg 101  Q
    |||||||| |||| |||||| |||| |||||||||||||||||| || ||||||| |||||| |||||||| ||||    
T  46645635 ggtaaatccgcagaaaaagctaaaaattctagtaatggttgggcttgctacaaaggaagttggagctgagcctggg 46645560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 32005955 - 32005846
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||||||||||| |||| ||||| ||||||| |||| || |||||||||||||| |||||||| ||||     ||||| ||||| | ||||||||    
T  32005955 aaatccgcaggaaaagctaaaaattctaataatggtagggcttgctacaaagaaagttggagctgagcctgggcactagcccaggctagct-gggggtgg 32005857  T
Q  129 ctccgcccctg 139  Q
    |||||||||||    
T  32005856 ctccgcccctg 32005846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 40969265 - 40969198
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagc 96  Q
    ||||| ||||||||||| |||| ||||  |||||||||| | || |||||||||||||||||||||||    
T  40969265 aaatccgcaggaaaagctaaaaattctcataatggttggacttgctacaaagaaagttgaagctgagc 40969198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 2576194 - 2576128
Alignment:
Q  35 gcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttggg 101  Q
    |||| |||||| |||| |||| ||||||||||||| || |||||||||||||| |||||||| ||||    
T  2576194 gcagaaaaagctaaaaattcttgtaatggttgggcttgctacaaagaaagttggagctgagcctggg 2576128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 8901844 - 8901762
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgccca 111  Q
    ||||||||||||||||  ||||||||||  ||||| ||||| |  |||||||||||||| |||||||| |||| | |||||||    
T  8901844 aaatctgcaggaaaagttaaaagttctaaaaatggctgggctttctacaaagaaagttggagctgagcctgggctagtgccca 8901762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 241 - 303
Target Start/End: Original strand, 45195701 - 45195763
Alignment:
Q  241 tgactccttgttttcccatcttattgatttcttgcacgctctatgtaatttggattatataat 303  Q
    ||||||||| |||| ||||||| ||||||| | |||||||| ||||| |||||||||||||||    
T  45195701 tgactccttatttttccatcttgttgatttatcgcacgctcgatgtagtttggattatataat 45195763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 52373779 - 52373670
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    |||||||||| |||||  ||||||||||||||||  || || |  || ||||||||||| |||||||| |||| | |||||||  |||| | ||||||||    
T  52373779 aaatctgcagaaaaagttaaaagttctagtaatgactgagcttactataaagaaagttggagctgagcctgggctagtgcccagactagct-gggggtgg 52373681  T
Q  129 ctccgcccctg 139  Q
    |||||||||||    
T  52373680 ctccgcccctg 52373670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 243 - 319
Target Start/End: Complemental strand, 30918271 - 30918195
Alignment:
Q  243 actccttgttttcccatcttattgatttcttgcacgctctatgtaatttggattatataatccaaatggcatgaaca 319  Q
    ||||||| |||||||| | ||||||||||| | |||||||||| | || || ||||||||| |||| ||||||||||    
T  30918271 actccttcttttcccaccctattgatttctcgtacgctctatgcagttcgggttatataattcaaacggcatgaaca 30918195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 10058569 - 10058511
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaag 84  Q
    |||||||| || |||||||| |||| |||| ||||||||||||| || |||||||||||    
T  10058569 ggtaaatccgcgggaaaagctaaaaattctcgtaatggttgggcttgctacaaagaaag 10058511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 31364176 - 31364067
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||||||||| | |||| ||||||||||||||||   || |||||||||||||| ||| |||| ||||     ||||| ||||| | ||||||||    
T  31364176 aaatccgcaggaaaaactaaaatttctagtaatggttggatttgctacaaagaaagttggagccgagcctgggcactagcccaggctagct-gggggtgg 31364078  T
Q  129 ctccgcccctg 139  Q
    |||||||||||    
T  31364077 ctccgcccctg 31364067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 138
Target Start/End: Complemental strand, 49745080 - 49744972
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    |||||| |||||||||  |||| |||||||||||| | | | ||||| ||||||||||| |||||||| |||  | |||||||  |||| | |||| |||    
T  49745080 aaatctacaggaaaaggtaaaacttctagtaatggctagacttgttataaagaaagttggagctgagcctggactagtgcccagactagct-ggggttgg 49744982  T
Q  129 ctccgcccct 138  Q
    ||||||||||    
T  49744981 ctccgcccct 49744972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 35 - 141
Target Start/End: Original strand, 304203 - 304309
Alignment:
Q  35 gcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtggctccgc 134  Q
    ||||||||||| ||||||||||||||||| || || || |||||||||||||| ||||||||||||| | ||||||||||||| ||||||||||| ||||    
T  304203 gcaggaaaagctaaaagttctagtaatggctgagcttgctacaaagaaagttggagctgagcttgggctagtgcccaagctagctggggggtggcaccgc 304302  T
Q  135 ccctggc 141  Q
    |||||||    
T  304303 ccctggc 304309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 13203808 - 13203698
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||||||||||| |||| |||||||||||||||||| || |||||||||||||| |||||||| ||||     ||||| ||||| ||||||||||    
T  13203808 aaatccgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagctgagcctgggcactagcccaggctagctggggggtgg 13203709  T
Q  129 ctccgcccctg 139  Q
    |||| ||||||    
T  13203708 ctccacccctg 13203698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 25562965 - 25562892
Alignment:
Q  28 taaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttggg 101  Q
    |||||| ||||||||||| ||||||||||||||||||||||| || |||||||||||||| |||||||| ||||    
T  25562965 taaatccgcaggaaaagctaaaagttctagtaatggttgggcttgctacaaagaaagttggagctgagcctggg 25562892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 26 - 139
Target Start/End: Complemental strand, 34756723 - 34756610
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttgggggg 125  Q
    |||||||| |||||||||| || | |||||||||| ||  || | || |||||||||||| |||||||||| |||| | ||||||| ||||| |||||||    
T  34756723 ggtaaatccgcaggaaaagtgagaggttctagtaacggccggacttgctacaaagaaagtagaagctgagcctgggctagtgcccaggctagctgggggg 34756624  T
Q  126 tggctccgcccctg 139  Q
    |||||||| |||||    
T  34756623 tggctccgtccctg 34756610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 2475863 - 2475753
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||| || |||| ||||||||||||||||| ||||| |  |||||||||||||| |||||||  |||  | |||||||| |||| ||||||||||    
T  2475863 aaatccgcaagacaagctaaaagttctagtaatggctgggcttcctacaaagaaagttggagctgagtctggactagtgcccaaactagctggggggtgg 2475764  T
Q  129 ctccgcccctg 139  Q
    ||||| |||||    
T  2475763 ctccgtccctg 2475753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 139
Target Start/End: Original strand, 4570554 - 4570663
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||||| |||||||||  |||||||||||| ||||| |  |||||||||||| |||||| ||| |||| | ||||||| ||||| | ||||||||    
T  4570554 aaatccgcaggtaaagcgaaagtttctagtaatggctgggcttactacaaagaaagtagaagctcagcctgggctagtgcccatgctagct-gggggtgg 4570652  T
Q  129 ctccgcccctg 139  Q
    |||||||||||    
T  4570653 ctccgcccctg 4570663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 140
Target Start/End: Original strand, 41114944 - 41115055
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||||||||| | |||| ||||||||||||||| || || |||||||||||||| ||| |||| ||||     ||||| ||||| |||||| |||    
T  41114944 aaatccgcaggaaaaactaaaaattctagtaatggttgagcttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctgggggatgg 41115043  T
Q  129 ctccgcccctgg 140  Q
    ||||||||||||    
T  41115044 ctccgcccctgg 41115055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 16221076 - 16221148
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttggg 101  Q
    ||||| ||||||||||| | |||||||||||||||||| || ||||||| ||||||| ||| |||||| ||||    
T  16221076 aaatccgcaggaaaagcaagaagttctagtaatggttgtgcttgttacacagaaagtagaacctgagcctggg 16221148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 22572781 - 22572842
Alignment:
Q  35 gcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagc 96  Q
    ||||||||||| |||  |||||||||||||| ||| || |||||||||||||| ||||||||    
T  22572781 gcaggaaaagctaaatattctagtaatggttaggcttgctacaaagaaagttggagctgagc 22572842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 6799960 - 6800032
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttggg 101  Q
    ||||| ||||||||||  |||| ||||||||||||||| || || |||||||||||||| ||| |||| ||||    
T  6799960 aaatccgcaggaaaagttaaaaattctagtaatggttgagcttgctacaaagaaagttggagccgagcctggg 6800032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 18299217 - 18299284
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagc 96  Q
    ||||| ||| ||||||  |||| |||||||||||||||||| || |||||||||||||| || |||||    
T  18299217 aaatccgcaagaaaagttaaaaattctagtaatggttgggcttgctacaaagaaagttggaggtgagc 18299284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 6e-27; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 49898455 - 49898345
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||||||||||||||| |||| |||||||||||| ||  | ||||||||||||||||| |||||||| |||| | ||||||| ||||| ||||||||||    
T  49898455 aaatctgcaggaaaagctaaaacttctagtaatggctgaacttgttacaaagaaagttggagctgagcctgggctagtgcccaggctagctggggggtgg 49898356  T
Q  129 ctccgcccctg 139  Q
    |||||||||||    
T  49898355 ctccgcccctg 49898345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 25007504 - 25007394
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||||||||||| |||| ||||||||||||| |||| || |||||||||||||| |||||||| ||||  |  ||||| ||||| ||||||||||    
T  25007504 aaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggcattagcccaggctagctggggggtgg 25007405  T
Q  129 ctccgcccctg 139  Q
    |||||||||||    
T  25007404 ctccgcccctg 25007394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 29 - 135
Target Start/End: Original strand, 33169357 - 33169462
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||||||||||||| | ||| ||||||||||||||| ||||||||| ||||| ||||||||||||||||| ||||| | ||||| |  |||||||    
T  33169357 aaatccgcaggaaaagcgagaggttatagtaatggttgggcttgttacaaaaaaagtagaagctgagcttgggttagtgcctaggctagct-aggggtgg 33169455  T
Q  129 ctccgcc 135  Q
    |||||||    
T  33169456 ctccgcc 33169462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 26 - 139
Target Start/End: Complemental strand, 14727361 - 14727248
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttgggggg 125  Q
    |||||||| ||||||||||| |||| |||||||||||||||| | || |||||||||||||| |||||||| ||||     ||||| ||||| | |||||    
T  14727361 ggtaaatccgcaggaaaagctaaaaattctagtaatggttggacttgctacaaagaaagttggagctgagcctgggcactagcccaggctagcttggggg 14727262  T
Q  126 tggctccgcccctg 139  Q
    ||||||||||||||    
T  14727261 tggctccgcccctg 14727248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 35 - 139
Target Start/End: Complemental strand, 4774041 - 4773937
Alignment:
Q  35 gcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtggctccgc 134  Q
    ||||||||||| ||||||||||||||||| ||||| || |||||| ||| ||| || ||||  |||| | ||||||| ||||| ||||||||||||||||    
T  4774041 gcaggaaaagctaaaagttctagtaatggctgggcttgctacaaaaaaaattggagttgagtctgggctagtgcccaggctagctggggggtggctccgc 4773942  T
Q  135 ccctg 139  Q
    |||||    
T  4773941 ccctg 4773937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 29 - 139
Target Start/End: Original strand, 6802175 - 6802284
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||||||||||||| ||||||||||||||| || || || |||||||||||| |||| ||||| |||| | ||||||| ||||| | ||||||||    
T  6802175 aaatccgcaggaaaagcgagaagttctagtaatggctgagcttgctacaaagaaagtagaagttgagcctgggctagtgcccaggctagct-gggggtgg 6802273  T
Q  129 ctccgcccctg 139  Q
    ||| |||||||    
T  6802274 ctctgcccctg 6802284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 27460736 - 27460626
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||| ||||||| |||| |||||||||||||||||| || |||||||||||||| |||||||| ||||     ||||| ||||| | ||||||||    
T  27460736 aaatccgcaagaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagctgagcctgggcactagcccatgctagctagggggtgg 27460637  T
Q  129 ctccgcccctg 139  Q
    |||||||||||    
T  27460636 ctccgcccctg 27460626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 29 - 139
Target Start/End: Original strand, 27584088 - 27584198
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||||||||||| |||| |||||||||||||| ||| || |||||||||||||| ||| |||| ||||     ||||| ||||| ||||||||||    
T  27584088 aaatccgcaggaaaagctaaaaattctagtaatggtttggcttgctacaaagaaagttggagccgagcctgggcgctagcccaggctagctggggggtgg 27584187  T
Q  129 ctccgcccctg 139  Q
    |||||||||||    
T  27584188 ctccgcccctg 27584198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 139
Target Start/End: Complemental strand, 24646086 - 24645984
Alignment:
Q  36 caggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtggctccgcc 135  Q
    |||||||||| |||||||||||||||||||| |  || |||||||||||||| || ||||| || | | ||| ||| ||||| |||||||||||||||||    
T  24646086 caggaaaagctaaaagttctagtaatggttgagt-tgctacaaagaaagttggagttgagcctgagctagtgtccatgctagctggggggtggctccgcc 24645988  T
Q  136 cctg 139  Q
    ||||    
T  24645987 cctg 24645984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 25011611 - 25011678
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagc 96  Q
    ||||| ||||||||||| |||| |||||||||||||||||| || |||||||||||||| ||||||||    
T  25011611 aaatccgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagctgagc 25011678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 8239322 - 8239209
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttgggggg 125  Q
    |||||||||||||||||||| |||| ||||||||||||| |||  |  |||||||||||||| |||||||| ||||     ||||| ||||| | |||||    
T  8239322 ggtaaatctgcaggaaaagctaaaaattctagtaatggtagggattactacaaagaaagttggagctgagcctgggcactagcccaggctagct-ggggg 8239224  T
Q  126 tggctccgcccctgg 140  Q
    |||||||||||||||    
T  8239223 tggctccgcccctgg 8239209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 139
Target Start/End: Original strand, 37154065 - 37154175
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||||||||||| |||| ||||||||||||| | || |  |||||||||||||| |||||||| ||||     ||||| ||||| ||||||||||    
T  37154065 aaatccgcaggaaaagctaaaaattctagtaatggtagagcttcctacaaagaaagttggagctgagcctgggcactagcccaggctagctggggggtgg 37154164  T
Q  129 ctccgcccctg 139  Q
    |||||||||||    
T  37154165 ctccgcccctg 37154175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 44305452 - 44305342
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||||||||||| |||| |||||||||| || |||| |  |||||||||||||| |||||||| ||||     ||||| ||||| ||||||||||    
T  44305452 aaatccgcaggaaaagctaaaaattctagtaattgtagggcttcctacaaagaaagttggagctgagcctgggcactagcccaggctagctggggggtgg 44305353  T
Q  129 ctccgcccctg 139  Q
    |||||||||||    
T  44305352 ctccgcccctg 44305342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 138
Target Start/End: Original strand, 44238934 - 44239042
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||| ||||||| |||| |||||||||||| ||||| |  |||||||||||||| |||||||| |||| | |||||||  |||| | ||||||||    
T  44238934 aaatccgcaagaaaagctaaaatttctagtaatggctgggctttctacaaagaaagttggagctgagcctgggctagtgcccagactagct-gggggtgg 44239032  T
Q  129 ctccgcccct 138  Q
    ||||||||||    
T  44239033 ctccgcccct 44239042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 9527085 - 9527021
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctg 93  Q
    ||||| ||||||||||| ||||||||||||||||| ||||| || |||||||||||||| |||||    
T  9527085 aaatccgcaggaaaagctaaaagttctagtaatggctgggcttgctacaaagaaagttggagctg 9527021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 1428455 - 1428520
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctga 94  Q
    ||||||||||||||| | |||| ||||||||||||| |||| || |||||||||||||| ||||||    
T  1428455 aaatctgcaggaaaaactaaaaattctagtaatggtagggcttgctacaaagaaagttggagctga 1428520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 48940502 - 48940570
Alignment:
Q  28 taaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagc 96  Q
    |||||| ||||||||||| ||||||||||||||||| | ||| || ||||||||| |||| ||||||||    
T  48940502 taaatccgcaggaaaagctaaaagttctagtaatggcttggcttgctacaaagaatgttggagctgagc 48940570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 142
Target Start/End: Complemental strand, 11647180 - 11647068
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||||||||||||| | ||||| ||||||| | ||| || |||||||||||| |||| ||||  | || | |||| || ||||| | ||||||||    
T  11647180 aaatccgcaggaaaagcgagaggttcttgtaatggcttggcttgctacaaagaaagtagaagttgagtctcggatagtgctcaggctagct-gggggtgg 11647082  T
Q  129 ctccgcccctggct 142  Q
    ||||||||||||||    
T  11647081 ctccgcccctggct 11647068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 31844704 - 31844817
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttgggggg 125  Q
    |||||||| | ||||||||| |||| |||||||||||||||||  || || ||||||||||| || ||||| ||||     |  || ||||| |||||||    
T  31844704 ggtaaatccgtaggaaaagctaaaatttctagtaatggttgggtttgctagaaagaaagttggagttgagcctgggcactagatcaggctagctgggggg 31844803  T
Q  126 tggctccgcccctg 139  Q
    ||||||||||||||    
T  31844804 tggctccgcccctg 31844817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 4642145 - 4642212
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagc 96  Q
    ||||| ||||||||||| ||||||||||||||||| ||  | || |||||||||||| | ||||||||    
T  4642145 aaatccgcaggaaaagctaaaagttctagtaatggctgaacttgctacaaagaaagtcggagctgagc 4642212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 33469013 - 33469083
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagc 96  Q
    |||||||| ||||||||||| |||| |||||||||||||||    || || ||||||||||| ||||||||    
T  33469013 ggtaaatccgcaggaaaagctaaaatttctagtaatggttgaatttgctataaagaaagttggagctgagc 33469083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 9e-26; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 27 - 139
Target Start/End: Original strand, 41759693 - 41759804
Alignment:
Q  27 gtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggt 126  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||| || |||||||||||||| |||||||| |||| | ||||||| ||||| | ||||||    
T  41759693 gtaaatctgcaagaaaagctaaaagttctagtaatggctgggcttgctacaaagaaagttggagctgagcctgggctagtgcccaggctagct-gggggt 41759791  T
Q  127 ggctccgcccctg 139  Q
    |||||||||||||    
T  41759792 ggctccgcccctg 41759804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 5991489 - 5991602
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttgggggg 125  Q
    |||||||| ||||||||| | ||||||||||||||||| ||||| || |||||||||| ||| || ||||| |||| | ||||||| ||||| |||||||    
T  5991489 ggtaaatccgcaggaaaaactaaaagttctagtaatggctgggcttgctacaaagaaaattggagttgagcctgggctagtgcccaggctagctgggggg 5991588  T
Q  126 tggctccgcccctg 139  Q
    ||||||||||||||    
T  5991589 tggctccgcccctg 5991602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 35 - 142
Target Start/End: Original strand, 21932859 - 21932966
Alignment:
Q  35 gcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtggctccgc 134  Q
    ||||||||||  ||||||| ||||||||||||||| || |||||||||||||| || ||||| |||| | ||||||| |||| ||||||||||||||| |    
T  21932859 gcaggaaaagttaaaagttttagtaatggttgggcttgctacaaagaaagttggagttgagcctgggctagtgcccaggctaattggggggtggctccac 21932958  T
Q  135 ccctggct 142  Q
    ||||||||    
T  21932959 ccctggct 21932966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 35300512 - 35300625
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttgggggg 125  Q
    |||||||| ||||||||||| |||  ||||||||||||| |||| || |||||||||||||| |||||||| ||||     ||||| ||||| |||||||    
T  35300512 ggtaaatccgcaggaaaagctaaacattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggcactagcccaggctagctgggggg 35300611  T
Q  126 tggctccgcccctg 139  Q
    ||||||||||||||    
T  35300612 tggctccgcccctg 35300625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 3012341 - 3012279
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttga 88  Q
    |||||||| ||||||||||| ||||||||||||||||||||||| || |||||||||||||||    
T  3012341 ggtaaatccgcaggaaaagctaaaagttctagtaatggttgggcttgctacaaagaaagttga 3012279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 22206758 - 22206868
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttgggggg 125  Q
    |||||||| ||||||||||| |||| || ||||||||  ||||| || |||||||||| ||| |||||||| |||| | ||||||| ||||| |||| ||    
T  22206758 ggtaaatccgcaggaaaagctaaaaattatagtaatgcctgggcttgctacaaagaaaattggagctgagcctgggctagtgcccaggctagctgggtgg 22206857  T
Q  126 tggctccgccc 136  Q
    |||||||||||    
T  22206858 tggctccgccc 22206868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 22227981 - 22227871
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttgggggg 125  Q
    |||||||| ||||||||||| |||| || ||||||||  ||||| || |||||||||| ||| |||||||| |||| | ||||||| ||||| |||| ||    
T  22227981 ggtaaatccgcaggaaaagctaaaaattatagtaatgcctgggcttgctacaaagaaaattggagctgagcctgggctagtgcccaggctagctgggtgg 22227882  T
Q  126 tggctccgccc 136  Q
    |||||||||||    
T  22227881 tggctccgccc 22227871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 135
Target Start/End: Complemental strand, 19377426 - 19377319
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttgggggg 125  Q
    |||||||||||| ||||||  |||| | |||||||||| |||   ||||||||||||||||| |||||||| |||| | ||||||||||||| |  ||||    
T  19377426 ggtaaatctgcaagaaaagttaaaactactagtaatggctggagttgttacaaagaaagttggagctgagcctgggctagtgcccaagctagct--gggg 19377329  T
Q  126 tggctccgcc 135  Q
    ||||||||||    
T  19377328 tggctccgcc 19377319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 25688262 - 25688375
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttgggggg 125  Q
    |||||||||||||||||||| ||||||| ||||||||| || || || |||||||||| ||| |||||||  |||| | || ||||  |||  |||| ||    
T  25688262 ggtaaatctgcaggaaaagctaaaagttttagtaatggctgagcttgctacaaagaaaattggagctgagtctgggctagtacccagactaactgggtgg 25688361  T
Q  126 tggctccgcccctg 139  Q
    ||||||||||||||    
T  25688362 tggctccgcccctg 25688375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 7873292 - 7873349
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaa 83  Q
    |||||||| |||| |||||| ||||||||||||||||||||||| || ||||||||||    
T  7873292 ggtaaatccgcagaaaaagctaaaagttctagtaatggttgggcttgctacaaagaaa 7873349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 139
Target Start/End: Original strand, 28694145 - 28694236
Alignment:
Q  48 aaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtggctccgcccctg 139  Q
    ||||||||||||||||  |  | || |||||||||||||| |||||||| |||||| ||| ||| ||||| |||||| ||||| ||||||||    
T  28694145 aaagttctagtaatggcggaacttgctacaaagaaagttggagctgagcctgggttagtgtccaggctagctgggggatggctacgcccctg 28694236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 139
Target Start/End: Complemental strand, 30852377 - 30852275
Alignment:
Q  35 gcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtggctccgc 134  Q
    ||||||||||  ||||||||||||||||| || || |  |||||||||| ||| |||||||| |||| | ||||||| ||||| |  |||||||||| ||    
T  30852377 gcaggaaaagttaaaagttctagtaatggctgagcttactacaaagaaaattggagctgagcctgggctagtgcccaggctagct--ggggtggctctgc 30852280  T
Q  135 ccctg 139  Q
    |||||    
T  30852279 ccctg 30852275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 37 - 140
Target Start/End: Original strand, 815068 - 815172
Alignment:
Q  37 aggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttgggg-ggtggctccgcc 135  Q
    ||||||||| ||||||||||||||||| | |   || |||||||||||||| |||||||| |||| | ||||||| ||||  ||||| |||| | |||||    
T  815068 aggaaaagctaaaagttctagtaatggctagatttgctacaaagaaagttggagctgagcctgggctagtgcccaggctaactggggaggtgacaccgcc 815167  T
Q  136 cctgg 140  Q
    |||||    
T  815168 cctgg 815172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 5e-24; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 36 - 141
Target Start/End: Complemental strand, 13694868 - 13694764
Alignment:
Q  36 caggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtggctccgcc 135  Q
    |||||||||||| ||||||||||||||| ||||| || ||||||||||||||||| ||||| |||| | ||||||| ||||| | |||||||||||||||    
T  13694868 caggaaaagcgagaagttctagtaatggatgggcttgctacaaagaaagttgaagttgagcctgggctagtgcccaggctagct-gggggtggctccgcc 13694770  T
Q  136 cctggc 141  Q
    ||||||    
T  13694769 cctggc 13694764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 26 - 139
Target Start/End: Complemental strand, 16567834 - 16567721
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttgggggg 125  Q
    |||||||| ||| ||||||| ||||||||||||||||| ||| | || |||||||||| ||| |||||||| |||| | ||||||| ||||| |||||||    
T  16567834 ggtaaatccgcaagaaaagctaaaagttctagtaatggctggacttgctacaaagaaaattggagctgagcctgggctagtgcccaggctagctgggggg 16567735  T
Q  126 tggctccgcccctg 139  Q
    ||||||||||||||    
T  16567734 tggctccgcccctg 16567721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 32953740 - 32953850
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttgggggg 125  Q
    |||||||| | ||||||||| ||||||||||||||||| ||||| || |||||||||| ||| |||||||| | || | ||||||| ||||| |||||||    
T  32953740 ggtaaatccgtaggaaaagctaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctcggctagtgcccaggctagctgggggg 32953839  T
Q  126 tggctccgccc 136  Q
    |||||||||||    
T  32953840 tggctccgccc 32953850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 13942855 - 13942968
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttgggggg 125  Q
    |||||||| | |||||||||  ||||||||||||| || ||||  || |||||||||||||| | |||||| |||| | ||||||| |||||||||| ||    
T  13942855 ggtaaatcggtaggaaaagctcaaagttctagtaaaggctgggtttgctacaaagaaagttggacctgagcctgggctagtgcccaggctagttgggagg 13942954  T
Q  126 tggctccgcccctg 139  Q
    ||||||||||||||    
T  13942955 tggctccgcccctg 13942968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 29 - 140
Target Start/End: Complemental strand, 34444006 - 34443895
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||||||||||| | || ||||||||||||| |||| || |||||||||||||| |||||||| ||||     ||||| ||||| ||||||||||    
T  34444006 aaatccgcaggaaaagctacaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggcactagcccaggctagctggggggtgg 34443907  T
Q  129 ctccgcccctgg 140  Q
    ||||||||||||    
T  34443906 ctccgcccctgg 34443895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 21069040 - 21068926
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttgggggg 125  Q
    |||||||| |||||||| || |||| |||||||||||||||||| |  |||||||||||||  || ||||| || | | ||||||| ||||| ||||| |    
T  21069040 ggtaaatccgcaggaaaggctaaaaattctagtaatggttgggcttactacaaagaaagttagagttgagcctgagctagtgcccaggctagctggggtg 21068941  T
Q  126 tggctccgcccctgg 140  Q
    |||||||||||||||    
T  21068940 tggctccgcccctgg 21068926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 1672559 - 1672671
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttgggggg 125  Q
    |||||||| |||||||| |  ||||||||||||||||||||||  || |||||||||| ||| |||||||| || | | ||||||| ||||| | |||||    
T  1672559 ggtaaatccgcaggaaaggataaaagttctagtaatggttgggattgctacaaagaaaattggagctgagcctgagctagtgcccaggctagct-ggggg 1672657  T
Q  126 tggctccgcccctg 139  Q
    ||||||||||||||    
T  1672658 tggctccgcccctg 1672671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 43228715 - 43228827
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttgggggg 125  Q
    |||||||| | ||||||||| ||||||||||||||||| ||||| || |||||||||| ||| || ||||| | || | ||||||| ||||| | |||||    
T  43228715 ggtaaatccgtaggaaaagctaaaagttctagtaatggctgggcttgctacaaagaaaattggagttgagccttggctagtgcccaggctagct-ggggg 43228813  T
Q  126 tggctccgcccctg 139  Q
    ||||||||||||||    
T  43228814 tggctccgcccctg 43228827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 26 - 138
Target Start/End: Complemental strand, 13695093 - 13694982
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttgggggg 125  Q
    ||||||||  |||||||||||| ||||||||||||||| ||  | || ||||||||||||||||||||||| || | | ||||||| ||||| |  ||||    
T  13695093 ggtaaatccacaggaaaagcgagaagttctagtaatggatgaacttgctacaaagaaagttgaagctgagcctgagctagtgcccaggctagct-agggg 13694995  T
Q  126 tggctccgcccct 138  Q
    |||||||||||||    
T  13694994 tggctccgcccct 13694982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 7162156 - 7162265
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttgggggg 125  Q
    |||||||| ||||||||||| |||| || ||||||||| ||||| || |||||||||| ||| |||||||| |||| | ||||||     || |||||||    
T  7162156 ggtaaatccgcaggaaaagctaaaatttttagtaatggctgggcttgctacaaagaaaattggagctgagcctgggctagtgccc-----agatgggggg 7162250  T
Q  126 tggctccgcccctgg 140  Q
    |||||||||||||||    
T  7162251 tggctccgcccctgg 7162265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 9738415 - 9738306
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttgggggg 125  Q
    |||||||| |||||||| |||| ||||||||||||||||||||| || | |||||||||| |||||||||   ||| | |||| ||| |||| | |||||    
T  9738415 ggtaaatccgcaggaaatgcgagaagttctagtaatggttgggcttgcttcaaagaaagtagaagctgagtcagggctagtgcacaaactagct-ggggg 9738317  T
Q  126 tggctccgccc 136  Q
    |||||||||||    
T  9738316 tggctccgccc 9738306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 12267482 - 12267580
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggg 124  Q
    ||||||||  |||||||||| ||||||||||||||| | | ||| || |||||||||||||| |||| ||| | | || ||||||||||||||||||||    
T  12267482 ggtaaatccacaggaaaagctaaaagttctagtaattgctaggcttgctacaaagaaagttggagctaagcctagattagtgcccaagctagttggggg 12267580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 15503956 - 15503847
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||||||||||| |||| |||||||||||||| ||| || |||||||||| |||||| ||||| |||| | |||||||  |||| |  |||||||    
T  15503956 aaatccgcaggaaaagctaaaaattctagtaatggttaggcttgctacaaagaaatttgaaggtgagcctgggctagtgcccagactagct-tggggtgg 15503858  T
Q  129 ctccgcccctg 139  Q
    |||||||||||    
T  15503857 ctccgcccctg 15503847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 30249005 - 30248895
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| |||| |||||| |||| |||||||||| ||||||| || |||||||||||||| ||| |||| ||||     ||||| ||||| ||||||||||    
T  30249005 aaatccgcagaaaaagctaaaaattctagtaatagttgggcttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctggggggtgg 30248906  T
Q  129 ctccgcccctg 139  Q
    |||||||||||    
T  30248905 ctccgcccctg 30248895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 16667566 - 16667635
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgag 95  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| | || |||||||||||||| |||||||    
T  16667566 ggtaaatccgcaggaaaagctaaaagttctagtaatggctggacttgctacaaagaaagttggagctgag 16667635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 139
Target Start/End: Complemental strand, 42989568 - 42989463
Alignment:
Q  35 gcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtg-cccaagctagttggggggtggctccg 133  Q
    |||| |||||||| ||||||||||||||| ||||| ||   |||||||||| |||||||| | |||| | ||| |||| ||||| |||||||||||||||    
T  42989568 gcagaaaaagcgagaagttctagtaatggctgggcttgcctcaaagaaagtagaagctgatcctgggctagtgccccaggctagctggggggtggctccg 42989469  T
Q  134 cccctg 139  Q
    ||||||    
T  42989468 cccctg 42989463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 17192742 - 17192817
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttggg 101  Q
    |||||||| ||||||| ||| ||||||||||||||||| || || || |||||||||||||| |||||||| ||||    
T  17192742 ggtaaatccgcaggaagagctaaaagttctagtaatggctgagcttgctacaaagaaagttggagctgagcctggg 17192817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 6900813 - 6900755
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttg 87  Q
    ||||||||||||||||| ||||||||||||||||| || || || ||||||||||||||    
T  6900813 aaatctgcaggaaaagctaaaagttctagtaatggctgagcttgctacaaagaaagttg 6900755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 139
Target Start/End: Original strand, 39605902 - 39606011
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    |||||||||| |||||| | | |||||| |||||| ||| | ||||||||||||||| |||||||||  |||| | |||| || ||||| | ||||||||    
T  39605902 aaatctgcagaaaaagcaagaggttctaataatggatggacttgttacaaagaaagtagaagctgagtctgggctagtgctcaggctagct-gggggtgg 39606000  T
Q  129 ctccgcccctg 139  Q
    |||||||||||    
T  39606001 ctccgcccctg 39606011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 138
Target Start/End: Complemental strand, 2476444 - 2476335
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||||||||||| |||| ||||||||||||| || | || |||||||||| ||| |||||||| ||||     ||||| ||||| ||||||| ||    
T  2476444 aaatccgcaggaaaagctaaaaattctagtaatggtaggacttgctacaaagaaaattggagctgagcctgggcactagcccaggctagctggggggagg 2476345  T
Q  129 ctccgcccct 138  Q
    ||||||||||    
T  2476344 ctccgcccct 2476335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 135
Target Start/End: Complemental strand, 34846398 - 34846289
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttgggggg 125  Q
    |||||||| |||||| |||| |||| |||||||||||||| | | || |||||||||||||| ||| |||| ||||     ||||| ||||| |||||||    
T  34846398 ggtaaatccgcaggataagctaaaaattctagtaatggtttgacttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctgggggg 34846299  T
Q  126 tggctccgcc 135  Q
    ||||||||||    
T  34846298 tggctccgcc 34846289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 139
Target Start/End: Complemental strand, 33006938 - 33006824
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctag-ttggggg 124  Q
    |||||||| ||||||||||| ||||  | ||||||||||||||  || |||||||||||||| ||| |||| ||||  |  ||||| ||||| | |||||    
T  33006938 ggtaaatccgcaggaaaagctaaaaaatttagtaatggttgggtttgctacaaagaaagttggagccgagcctgggcattagcccaggctagctgggggg 33006839  T
Q  125 gtggctccgcccctg 139  Q
    |||||||| ||||||    
T  33006838 gtggctcctcccctg 33006824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 37779707 - 37779594
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttgggggg 125  Q
    |||||||| |||| |||| | ||||||||||||||||| ||  | || |||||||||| ||| || ||||| |||  | ||||||| ||||| | |||||    
T  37779707 ggtaaatccgcagaaaaaactaaaagttctagtaatggctgaacttgctacaaagaaaattggagttgagcctggactagtgcccaggctagct-ggggg 37779609  T
Q  126 tggctccgcccctgg 140  Q
    |||||||||||||||    
T  37779608 tggctccgcccctgg 37779594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 27 - 139
Target Start/End: Original strand, 41218456 - 41218568
Alignment:
Q  27 gtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggt 126  Q
    ||||||| ||||||||||| ||||||||||||||||| ||||| || ||||| |||||| | |||||||| |||| | |||| || ||||| ||||||||    
T  41218456 gtaaatccgcaggaaaagctaaaagttctagtaatggctgggcttgctacaaggaaagtcggagctgagcctgggctagtgctcaggctagctggggggt 41218555  T
Q  127 ggctccgcccctg 139  Q
    |||||||||||||    
T  41218556 ggctccgcccctg 41218568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 44047630 - 44047520
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||||||||||| |||| ||||||||||||| |||| || |||||||||||||| |||||||| |||||    ||||| ||||| ||||||||||    
T  44047630 aaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggtactagcccaggctagctggggggtgg 44047531  T
Q  129 ctccgcccctg 139  Q
    |||||||||||    
T  44047530 ctccgcccctg 44047520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 53987910 - 53987800
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||||||||||| |||||||||||||||||||| ||    |||||||||| |||||||||||| |||  | ||||||||||||| || |||||||    
T  53987910 aaatccgcaggaaaagctaaaagttctagtaatggttgagctgactacaaagaaaattgaagctgagcctggactagtgcccaagctagctgaggggtgg 53987811  T
Q  129 ctccgcccctg 139  Q
    |||||||||||    
T  53987810 ctccgcccctg 53987800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 29 - 139
Target Start/End: Original strand, 25391899 - 25392009
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||||||||||| |||| ||||||||||||| |||| || ||| |||||||||| |||||||| ||||  |  ||||| ||||| ||||||||||    
T  25391899 aaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacgaagaaagttggagctgagcctgggcattagcccaggctagctggggggtgg 25391998  T
Q  129 ctccgcccctg 139  Q
    |||||||||||    
T  25391999 ctccgcccctg 25392009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 44625744 - 44625634
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||||||||||||||| |||| |||||||||| ||||||| || |||||||||||||| ||| |||| ||||     ||||| ||||| ||||||||||    
T  44625744 aaatctgcaggaaaagctaaaaattctagtaatagttgggcttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctggggggtgg 44625645  T
Q  129 ctccgcccctg 139  Q
    |||||||||||    
T  44625644 ctccgcccctg 44625634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 9600396 - 9600287
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||||||||||| ||||||||||||||||| ||||  |  |||||||||| | | ||||||||||||| | ||||||| ||||| | ||||||||    
T  9600396 aaatccgcaggaaaagccaaaagttctagtaatggctgggattactacaaagaaaataggagctgagcttgggctagtgcccaggctagct-gggggtgg 9600298  T
Q  129 ctccgcccctg 139  Q
    |||||||||||    
T  9600297 ctccgcccctg 9600287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 35 - 136
Target Start/End: Original strand, 33179205 - 33179306
Alignment:
Q  35 gcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtggctccgc 134  Q
    ||||||||||| ||||||||||||||||| ||| | || |||||| ||||||| |||||||| |  | | ||||||| |||||||||||| |||||||||    
T  33179205 gcaggaaaagctaaaagttctagtaatggctggacttgctacaaaaaaagttggagctgagcctaagctagtgcccaggctagttgggggatggctccgc 33179304  T
Q  135 cc 136  Q
    ||    
T  33179305 cc 33179306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 12909866 - 12909763
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||||||||||| |||| ||||||||||||| |||| || |||||||||||||| |||||||| ||       ||||| ||||| ||||||||||    
T  12909866 aaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctg-------gcccaggctagctggggggtgg 12909774  T
Q  129 ctccgcccctg 139  Q
    |||||||||||    
T  12909773 ctccgcccctg 12909763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 43700229 - 43700296
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagc 96  Q
    ||||||||||||||||| |||| |||||||||||||||||| || |||||||||||||| ||| ||||    
T  43700229 aaatctgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagccgagc 43700296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 7500992 - 7500918
Alignment:
Q  27 gtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttggg 101  Q
    ||||||| ||||||||||| |||| |||||||||||||||||| || |||||||||||||| ||| |||| ||||    
T  7500992 gtaaatccgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagccgagcctggg 7500918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 28311323 - 28311213
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||||||||| | |||| ||||||||||||| |||| ||||||||||||||||| |||||||| ||||       ||| ||||| ||||||||||    
T  28311323 aaatccgcaggaaaaactaaaaattctagtaatggtagggcttgttacaaagaaagttggagctgagcctgggcactattccaggctagctggggggtgg 28311224  T
Q  129 ctccgcccctg 139  Q
    |||||||||||    
T  28311223 ctccgcccctg 28311213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 53651944 - 53651835
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||||||||||| |||| ||||||||||||| |||| || |||||||||||||| |||||||| ||||     ||||| ||||| | ||||||||    
T  53651944 aaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggcactagcccaggctagct-gggggtgg 53651846  T
Q  129 ctccgcccctg 139  Q
    |||||||||||    
T  53651845 ctccgcccctg 53651835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 47511719 - 47511787
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagct 97  Q
    ||||| ||||||||||||||| ||||||||||||| ||| | ||||||||||||| | |||||||||||    
T  47511719 aaatccgcaggaaaagcgaaaggttctagtaatggctggacttgttacaaagaaattagaagctgagct 47511787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 26278400 - 26278288
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttgggggg 125  Q
    |||||||| ||| ||||||| |||| |||||||||||| | ||| || | |||||||| ||| |||||||| |||| | ||||||| ||||| |  ||||    
T  26278400 ggtaaatccgcatgaaaagctaaaaattctagtaatggctaggcttgctccaaagaaaattggagctgagcctgggctagtgcccaggctagct--gggg 26278303  T
Q  126 tggctccgcccctgg 140  Q
    |||||||||||||||    
T  26278302 tggctccgcccctgg 26278288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 35077261 - 35077151
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttgggggg 125  Q
    |||||||| |||| |||||| ||||||||| | ||||| |  || || |||||||||| ||| | |||||||| || | ||||||||||||| |||| ||    
T  35077261 ggtaaatccgcagaaaaagctaaaagttctggcaatggctacgcttgctacaaagaaaattggaactgagcttaggctagtgcccaagctagctgggtgg 35077162  T
Q  126 tggctccgccc 136  Q
    |||||||||||    
T  35077161 tggctccgccc 35077151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 37516679 - 37516618
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttg 87  Q
    |||||||| ||||||||||| |||| |||||||||||||||| | || ||||||||||||||    
T  37516679 ggtaaatccgcaggaaaagctaaaaattctagtaatggttggacttgctacaaagaaagttg 37516618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 139
Target Start/End: Original strand, 41199965 - 41200075
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||||||||||  | | ||||||||||| | ||||| |  |||||| ||||| |||||||||| |||| | |||| || ||||  ||||||||||    
T  41199965 aaatccgcaggaaaaggcagaggttctagtaattgctgggcttactacaaaaaaagtagaagctgagcctgggctagtgctcaggctaactggggggtgg 41200064  T
Q  129 ctccgcccctg 139  Q
    |||||||||||    
T  41200065 ctccgcccctg 41200075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 14461111 - 14461039
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttggg 101  Q
    ||||| ||||||||||  |||| ||||||||||||| |||| || |||||||||| ||| |||||||| ||||    
T  14461111 aaatccgcaggaaaagttaaaaattctagtaatggtagggcttgctacaaagaaaattggagctgagcctggg 14461039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 41358700 - 41358768
Alignment:
Q  27 gtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgag 95  Q
    ||||||| | ||||||||||| |||||||| ||||||||| |  || |||||||||||| |||||||||    
T  41358700 gtaaatccgtaggaaaagcgagaagttctaataatggttgagtttgctacaaagaaagtagaagctgag 41358768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 53068288 - 53068224
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctg 93  Q
    ||||| ||||||||||  |||| |||||||||||| ||| | ||||||||||||||||| |||||    
T  53068288 aaatccgcaggaaaagttaaaacttctagtaatggctggacttgttacaaagaaagttggagctg 53068224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 251 - 368
Target Start/End: Complemental strand, 44053518 - 44053401
Alignment:
Q  251 ttttcccatcttattgatttcttgcacgctctatgtaatttggattatataatccaaatggcatgaacatcccatctaaacctcccaaacatgttaaaac 350  Q
    ||||||||  |||| ||||||| || ||| |||| || |||||||||||||| || || ||||| || |||||||  |||||||| || || |||||||     
T  44053518 ttttcccactttatcgatttctcgcgcgccctatatagtttggattatataacccgaacggcataaatatcccataaaaacctccaaagcacgttaaaat 44053419  T
Q  351 attcaggattttagaatc 368  Q
    |||  |||||||| ||||    
T  44053418 attttggattttataatc 44053401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 29 - 138
Target Start/End: Original strand, 34282972 - 34283081
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||| ||||||| ||||||||||||||||  ||| | || |||||||||||||| |||||||| |||| | ||||||| ||||| ||||||||||    
T  34282972 aaatccgcaagaaaagctaaaagttctagtaatgactggacttgctacaaagaaagttggagctgagcctgggctagtgcccaggctagctggggggtgg 34283071  T
Q  129 ctccgcccct 138  Q
    ||||||||||    
T  34283072 ctccgcccct 34283081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 29 - 140
Target Start/End: Complemental strand, 38214799 - 38214688
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||||||||||| ||||||||||||| ||| ||| | || |||||||||| ||| ||||||||  ||| | ||||||| ||||| ||||||||||    
T  38214799 aaatccgcaggaaaagctaaaagttctagtattggctggacttgctacaaagaaaattggagctgagcccgggctagtgcccaggctagctggggggtgg 38214700  T
Q  129 ctccgcccctgg 140  Q
    ||||||||||||    
T  38214699 ctccgcccctgg 38214688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 29 - 139
Target Start/End: Original strand, 21138133 - 21138243
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||||||||||| | | ||||||||||||||| ||| || |||||||||||| |||||||||| |||  |  |||| | ||||| ||||||||||    
T  21138133 aaatccgcaggaaaagcaagaggttctagtaatggttaggcttgctacaaagaaagtagaagctgagcctggactaatgcctatgctagctggggggtgg 21138232  T
Q  129 ctccgcccctg 139  Q
    |||||||||||    
T  21138233 ctccgcccctg 21138243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 24965073 - 24964966
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||||||||||| |||| |||||||||||||||||| || |||||||||||||| ||| |||| ||||     ||||| ||||| |||| |||||    
T  24965073 aaatccgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctgggtggtgg 24964974  T
Q  129 ctccgccc 136  Q
    ||||||||    
T  24964973 ctccgccc 24964966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 36406573 - 36406688
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttgggggg 125  Q
    ||||||||  |||||||||| |||| || |||||||| |||||| || |||||||||||||| ||| |||| ||||     ||||| ||||| |||||||    
T  36406573 ggtaaatccacaggaaaagctaaaaattatagtaatgtttgggcttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctgggggg 36406672  T
Q  126 tggctccgcccctggc 141  Q
    ||||||||||||||||    
T  36406673 tggctccgcccctggc 36406688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 139
Target Start/End: Original strand, 27321925 - 27322034
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||||||||| | ||||||| ||||||||| ||||| || |||||||||| ||| |||||||| ||||   ||||||| ||||| ||||| ||||    
T  27321925 aaatccgcaggaaaaactaaaagttttagtaatggctgggcttgctacaaagaaaattggagctgagcctgggcaagtgcccaggctagctgggg-gtgg 27322023  T
Q  129 ctccgcccctg 139  Q
    |||||||||||    
T  27322024 ctccgcccctg 27322034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 39431746 - 39431860
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttgggggg 125  Q
    |||||||| ||| ||||||| |||||||| |||||| |  |||  || |||||||||||||| ||||||||  ||| | ||||||| ||||| |||||||    
T  39431746 ggtaaatccgcaagaaaagctaaaagttcaagtaattgaagggtttgctacaaagaaagttggagctgagcccgggctagtgcccaggctagctgggggg 39431845  T
Q  126 tggctccgcccctgg 140  Q
    |||||| ||||||||    
T  39431846 tggctctgcccctgg 39431860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 8968373 - 8968259
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttgggggg 125  Q
    |||||||| |||| ||||| || | ||||||||||||| ||| | || ||||||| |||| |||||||||  |||| | ||||| | ||||| |||||||    
T  8968373 ggtaaatccgcagaaaaagtgataggttctagtaatggctggacttgctacaaaggaagtagaagctgagtctgggctagtgcctaggctagctgggggg 8968274  T
Q  126 tggctccgcccctgg 140  Q
    |||||||| ||||||    
T  8968273 tggctccgtccctgg 8968259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 251 - 353
Target Start/End: Complemental strand, 37325239 - 37325137
Alignment:
Q  251 ttttcccatcttattgatttcttgcacgctctatgtaatttggattatataatccaaatggcatgaacatcccatctaaacctcccaaacatgttaaaac 350  Q
    |||| |||||||||||||||||  | ||  ||||| ||||| ||||||| ||| |||||| ||| ||||||||||  |||||||| ||||| ||||||||    
T  37325239 tttttccatcttattgatttctcacgcgtcctatgcaatttagattatagaattcaaatgacataaacatcccattaaaacctccaaaacacgttaaaac 37325140  T
Q  351 att 353  Q
    |||    
T  37325139 att 37325137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 13243123 - 13243064
Alignment:
Q  28 taaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttg 87  Q
    |||||||||||||||||| |||||||||| |||||| ||||| || |||||| |||||||    
T  13243123 taaatctgcaggaaaagctaaaagttctaataatggctgggcttgctacaaaaaaagttg 13243064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 28928093 - 28928027
Alignment:
Q  35 gcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttggg 101  Q
    ||||||||||| |||| |||||||||||||| ||| || |||||||||||||| ||| |||| ||||    
T  28928093 gcaggaaaagctaaaaattctagtaatggttaggcttgctacaaagaaagttggagccgagcctggg 28928027  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 3384103 - 3384178
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttggg 101  Q
    |||||||| |||| |||||| |||| ||||| ||||||| || | || |||||||||||||| |||||||| ||||    
T  3384103 ggtaaatccgcagaaaaagctaaaaattctaataatggtaggacttgctacaaagaaagttggagctgagcctggg 3384178  T

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Target: scaffold0108 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 29 - 139
Target Start/End: Original strand, 21075 - 21183
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| |||||||||| ||||||||  |||||||| ||||| ||| |||||||||||||||||||||| |||| | ||||||| ||||| |||||  |||    
T  21075 aaatccgcaggaaaagtgaaaagtt--agtaatggctgggcttgtaacaaagaaagttgaagctgagcctgggctagtgcccaggctagctggggattgg 21172  T
Q  129 ctccgcccctg 139  Q
    |||||||||||    
T  21173 ctccgcccctg 21183  T

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Target: scaffold0638 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 4142 - 4032
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttgggggg 125  Q
    |||||||  ||||||||||| ||||||||||||||||| ||||| || |||||||||| ||| |||||||| |||| | ||||||| ||||  |||||||    
T  4142 ggtaaattcgcaggaaaagctaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctgggctagtgcccaggctaactgggggg 4043  T
Q  126 tggctccgccc 136  Q
    ||| |||||||    
T  4042 tggatccgccc 4032  T

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Target: chr6 (Bit Score: 51; Significance: 8e-20; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 34188834 - 34188720
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttgggggg 125  Q
    |||||||| ||||||||||   |||||||||||||||| ||||| || |||||||||||||| |||||||| | || | ||||||| ||||| |||| ||    
T  34188834 ggtaaatccgcaggaaaagttgaaagttctagtaatggctgggcttgctacaaagaaagttggagctgagcctcggctagtgcccaggctagctgggagg 34188735  T
Q  126 tggctccgcccctgg 140  Q
    || ||||||||||||    
T  34188734 tgactccgcccctgg 34188720  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 34249088 - 34249195
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||||||||||| |||| |||||||||||||||||| || |||||||||||||| || ||||  ||||     ||||||||||| ||||||||||    
T  34249088 aaatccgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagttgagtctgggcactagcccaagctagctggggggtgg 34249187  T
Q  129 ctccgccc 136  Q
    ||||||||    
T  34249188 ctccgccc 34249195  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 10397868 - 10397977
Alignment:
Q  30 aatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtggc 129  Q
    |||| ||||||||||| |||| |||| ||||||||||||  || |||||||||||||| |||||||| ||||     ||||| ||||| |||||||||||    
T  10397868 aatccgcaggaaaagctaaaaattctcgtaatggttgggtttgctacaaagaaagttggagctgagcctgggcactagcccaggctagctggggggtggc 10397967  T
Q  130 tccgcccctg 139  Q
    ||||||||||    
T  10397968 tccgcccctg 10397977  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 28614455 - 28614568
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttgggggg 125  Q
    |||||||| | ||||||||  ||||||||||||||||| | ||| || |||||||| | ||| |||||||| |||| | ||||||| ||||| |||||||    
T  28614455 ggtaaatccgtaggaaaagttaaaagttctagtaatggctaggcttgctacaaagataattggagctgagcctgggctagtgcccacgctagctgggggg 28614554  T
Q  126 tggctccgcccctg 139  Q
    ||||||| ||||||    
T  28614555 tggctccacccctg 28614568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 5582516 - 5582407
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||||||||||||| | ||||||||||| | || || || |||||||||||| |||| ||||| |||| | ||||||| ||||| | ||||||||    
T  5582516 aaatccgcaggaaaagcgagaggttctagtaatagctgtgcttgctacaaagaaagtagaagttgagcctgggctagtgcccaggctagct-gggggtgg 5582418  T
Q  129 ctccgcccctg 139  Q
    |||||||||||    
T  5582417 ctccgcccctg 5582407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 2960724 - 2960615
Alignment:
Q  30 aatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtggc 129  Q
    |||| ||||||||||| ||||||||||||| ||| ||| | || |||||||||| ||| |||||||| |||| | || ||||  | ||||||||||| ||    
T  2960724 aatccgcaggaaaagctaaaagttctagtattggctggacttgctacaaagaaaattggagctgagcctgggctagtacccagacaagttggggggtcgc 2960625  T
Q  130 tccgcccctg 139  Q
    ||||||||||    
T  2960624 tccgcccctg 2960615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 9046999 - 9047068
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgag 95  Q
    |||||||| ||||||||||| |||| |||||||||||||||| | |  ||||||||||||||||||||||    
T  9046999 ggtaaatccgcaggaaaagctaaaaattctagtaatggttggacttactacaaagaaagttgaagctgag 9047068  T

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Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 139
Target Start/End: Original strand, 23663834 - 23663944
Alignment:
Q  29 aaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtgg 128  Q
    ||||| ||||||||||| |||| || ||| ||||||||||| || |||||||||||||| ||| |||| ||||     ||||| ||||| ||||||||||    
T  23663834 aaatccgcaggaaaagctaaaaattatagcaatggttgggcttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctggggggtgg 23663933  T
Q  129 ctccgcccctg 139  Q
    |||| ||||||    
T  23663934 ctcctcccctg 23663944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 14939003 - 14939092
Alignment:
Q  47 aaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtggctccgccc 136  Q
    ||||||||||||||||| | ||  || |||||||||| ||| |||||||| || | | ||| ||| ||||| ||||||||||||||||||    
T  14939003 aaaagttctagtaatggctaggtttgctacaaagaaaattggagctgagcctgagctagtgtccaggctagctggggggtggctccgccc 14939092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 15528978 - 15528917
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttg 87  Q
    |||||||| ||||||||||| |||| ||||| ||||||| |||| || ||||||||||||||    
T  15528978 ggtaaatccgcaggaaaagctaaaaattctaataatggtagggcttgctacaaagaaagttg 15528917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 9696087 - 9696012
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttggg 101  Q
    |||||||| ||||||||| | |||| ||||| ||||| |||||| || |||||||||||||| ||| |||| ||||    
T  9696087 ggtaaatccgcaggaaaatctaaaaattctaataatgattgggcttgctacaaagaaagttggagccgagcctggg 9696012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 2836288 - 2836350
Alignment:
Q  30 aatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagct 92  Q
    |||| |||| |||||| ||||||||||| ||||||||||  || |||||||||||||| ||||    
T  2836288 aatccgcagaaaaagctaaaagttctaggaatggttgggtttgctacaaagaaagttggagct 2836350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 137
Target Start/End: Complemental strand, 6950 - 6843
Alignment:
Q  30 aatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttggggggtggc 129  Q
    |||| ||||||||||| |||| ||||||||||||| |||| || |||||||||||||| |||| ||  |||| | ||||||| ||||| | ||||| |||    
T  6950 aatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctaagtctgggctagtgcccaggctagcttgggggaggc 6851  T
Q  130 tccgcccc 137  Q
    ||||||||    
T  6850 tccgcccc 6843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 11563 - 11493
Alignment:
Q  30 aatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttggg 101  Q
    |||| ||||||||||  |||| ||||||||||||| |||| || |||||||||||||| |||||||| ||||    
T  11563 aatccgcaggaaaagaaaaaa-ttctagtaatggtagggcttgctacaaagaaagttggagctgagcctggg 11493  T

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Target: scaffold0021 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 109383 - 109494
Alignment:
Q  26 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcctgttacaaagaaagttgaagctgagcttgggtttgtgcccaagctagttgggggg 125  Q
    ||||||||  |||||||||  |||||||||||||||   ||||  || |||||||||||||| |||||||| |||  | ||||||||||||| |  ||||    
T  109383 ggtaaatccacaggaaaagttaaaagttctagtaataactggggttgctacaaagaaagttggagctgagcctggactagtgcccaagctagct--gggg 109480  T
Q  126 tggctccgcccctg 139  Q
    ||||||| ||||||    
T  109481 tggctccacccctg 109494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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