View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16471_low_10 (Length: 618)
Name: NF16471_low_10
Description: NF16471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16471_low_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 592; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 19 - 618
Target Start/End: Complemental strand, 1903836 - 1903237
Alignment:
| Q |
19 |
ccaccatccacgcagaaaaacggtgtggcctcacttaactcaattgaactacttggaatctcctttgcaccatcaccttcagatacaccacaactcctct |
118 |
Q |
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| T |
1903836 |
ccaccatccacgcagaaaaacggtgtggcctcacttaactcaattgaactacttggaatctcctttgcaccatcaccttcagatgcaccacatctcctct |
1903737 |
T |
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| Q |
119 |
cagaaacaaagtaaccaacctcagcagcttccctagccgcttcgtccctttctatttcccacctcgcaccaccttcctcccttgcaagcctcctcgttct |
218 |
Q |
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| T |
1903736 |
cagaaacaaagtaaccaacctcagcagcttccctagccgcttcgtccctttctatttcccacctcgcaccaccttcctcccttgcaagcctcctcgttct |
1903637 |
T |
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| Q |
219 |
cgtccgataatctatcccatcttcactcgaaaatctcctctctctccccccttccgtaaacggtatccccaaccaagtaaaatccttcttctgcacaacc |
318 |
Q |
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| T |
1903636 |
cgtccgataatctatcccatcttcactcgaaaatctcctctctctccccccttccgtaaacggtatccccaaccaagtaaaatccttcttctgcacaacc |
1903537 |
T |
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| Q |
319 |
aacacactcggctgcgtcaaaaccgcatcaacaaccaccttccccctcctcaaacttgcaaaaggtcgtaccctaatcttcaccgtcggaacctccccac |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1903536 |
aacacactcggctgcgtcaaaaccgcatcaacaaccaccttccccctcctcaaacttgcaaaaggtcgtaccctaatcttcaccgtcggaacctccccac |
1903437 |
T |
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| Q |
419 |
acgaaaactcctccttatgcggcccaatcgaacacgcctccaacgtaatactcaacggtgaaatcctcctaactttaccaaactcaacatccctctgaat |
518 |
Q |
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| T |
1903436 |
acgaaaactcctccttatgcggcccaatcgaacacgcctccaacgtaatactcaacggtgaaatcctcctaactttaccaaactcaacatccctctgaat |
1903337 |
T |
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| Q |
519 |
atattcactaatcgccaaacaaacactaggcaacaaattattctcaacaaaaaccttagctttattctgaccataccaaaccaacatacacacaccacct |
618 |
Q |
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| T |
1903336 |
atattcactaatcgccaaacaaacactaggcaacaaattattctcaacaaaaaccttagctttattctgaccataccaaaccaacatacacacaccacct |
1903237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 280 - 502
Target Start/End: Original strand, 49944346 - 49944568
Alignment:
| Q |
280 |
ggtatccccaaccaagtaaaatccttcttctgcacaaccaacacactcggctgcgtcaaaaccgcatcaacaaccaccttccccctcctcaaacttgcaa |
379 |
Q |
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|||||||| |||||| || |||||||||||||||||| ||| ||||| || || | |||||| |||||||| || || || || ||| ||||||| |||| |
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| T |
49944346 |
ggtatccctaaccaactataatccttcttctgcacaatcaatacacttggatgtgacaaaactgcatcaaccacaacttttcctctcatcaaactagcaa |
49944445 |
T |
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| Q |
380 |
aaggtcgtaccctaatcttcaccgtcggaacctccccacacgaaaactcctccttatgcggcccaatcgaacacgcctccaacgtaatactcaacggtga |
479 |
Q |
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| T |
49944446 |
aaggatgaatatgaatcttaacaataggaacctcaccacaagaaaattcctccttatgtggcccaaatgaacatgactccaatgtcaaactcaatggaga |
49944545 |
T |
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| Q |
480 |
aatcctcctaactttaccaaact |
502 |
Q |
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|| || ||||| || ||||||| |
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| T |
49944546 |
gattcttctaacctttccaaact |
49944568 |
T |
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