View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16471_low_11 (Length: 579)
Name: NF16471_low_11
Description: NF16471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16471_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 18 - 569
Target Start/End: Original strand, 27015772 - 27016318
Alignment:
| Q |
18 |
caaataagaccctgtttttatatccttaggactattgggaaaatgagaatttggcttaccacattaccacatgaagaatgcatcgaaacaagggctcttt |
117 |
Q |
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| T |
27015772 |
caaataagaccctgtttttatatccttaggactattgggaaaatgagaagttggcttaccacattaccacatgaagaatgcatcgaaacaagggctcttt |
27015871 |
T |
|
| Q |
118 |
ctaaaaacatacaaatcgacagctttatcttctggtagagttgaagtgaagctcaaaccaaagtcaataagaacctacacaaaatacacatcacagcact |
217 |
Q |
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| T |
27015872 |
ctaaaa-catacaaatcgacggctttatcttctggtagagttgaagtgaagcttaaaccaaagtcaataagaacctacacaaaatacacatcacagcagc |
27015970 |
T |
|
| Q |
218 |
aacaaacgttaatgatatttctcatattgtataacctaagtaaatgtaataaatattaattacaggacctaagagatgaatgaacgcaccaactgatcag |
317 |
Q |
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| T |
27015971 |
aacaaaagttaatgatatttctcatattgta----ctaagtaaatgtaataaatattaattccaggacctaagagacgaatgaactcaccaactgatcag |
27016066 |
T |
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| Q |
318 |
tatcattctttagtaacatgtttgatgttgttaaatcgccatgaacaagaccaccatcatgtaacttcgcaattacatcaccaatttgggatgcaatctt |
417 |
Q |
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| T |
27016067 |
tatcattctttagtaacatgtttgatgttgttaaatcgccatgaacaagaccaccatcatgtaacttcgcaattacatcaccaatttgggatgcaatctt |
27016166 |
T |
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| Q |
418 |
tcccaggcgctcttcattgacaccgcatgatccgaattcaagaaatacatctttgaccgaaggtccgtcaacgaattcaaatgttaatgtgtgcaacaca |
517 |
Q |
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||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||| |||||||||||||| ||||| | ||| |
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| T |
27016167 |
tcccaagcgctcttcattgacaccacatgatccgaattcgagaaatacatctttgactgaaggtccttcaacaaattcaaatgttaaagtgtgtgataca |
27016266 |
T |
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| Q |
518 |
ggatcaacagcatataataccggtgtacaaaccccaagtctccttgcctttg |
569 |
Q |
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| T |
27016267 |
ggatccacagcatacagcacaggagtacaaacaccgagtcgccttgcttttg |
27016318 |
T |
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