View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16471_low_12 (Length: 566)
Name: NF16471_low_12
Description: NF16471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16471_low_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 11 - 551
Target Start/End: Complemental strand, 42124558 - 42124018
Alignment:
| Q |
11 |
cagagacaggtgcaattgctagagatgaaaatgattcacgtcctttgcttttccttgctaatgattttcaaaaccgtgttagttcctccaatggagtttc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42124558 |
cagagacaggtgcaattgctagagatgaaaatgattcacgtcctttgcttttccttgctaatgattttcaaaaccgtgttagttcctccaatggagtttc |
42124459 |
T |
|
| Q |
111 |
ttacgtttttcaaattcaagtaagaccagttccagacgatacacaaggccgcgaggttgcattggattgtactaaaccatgggatgaaaatgaattccct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42124458 |
ttacgtttttcaaattcaagtaagaccagttccagacgatacacaaggccgcgaggttgcattggattgtactaaaccatgggatgaaaatgaattccct |
42124359 |
T |
|
| Q |
211 |
ttcactgatgttggagagattaacctcaatgaaaatattcctatggaagattcacaaaagcttgagtttaatccttatcttaaaagcaatgagttggata |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42124358 |
ttcactgatgttggagagattaacctcaatgaaaatattcctatggaagattcacaaaagcttgagtttaatccttatcttaaaagcaatgagttggata |
42124259 |
T |
|
| Q |
311 |
caattacagctacttccagcacacaaagtgcttcaattgatcacggccgttcattgatctatgagatatgtcagcacgtgcgcaatagacagccactccc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42124258 |
caattacagctacttccagcacacaaagtgcttcaattgatcacggccgttcattgatctatgagatatgtcagcacgtgcgcaatagacagccactccc |
42124159 |
T |
|
| Q |
411 |
agaagcttggagaaaccttgtacaacaatccaatgttaaggttgacttgtcctgctgtccaatagcatcatcagctccattacctgaaaaagaaccattg |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42124158 |
agaagcttggagaaaccttgtacaacaatccaatgttaaggttgacttgtcctgctgtccaatagcatcatcagctccattacctgaaaaagaaccattg |
42124059 |
T |
|
| Q |
511 |
ctgaaaaagaaagcgacaccagcattaacattgacaagaac |
551 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42124058 |
ctgaaaaagaaagcgacaccagcattaacattgacaagaac |
42124018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University