View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16471_low_16 (Length: 485)

Name: NF16471_low_16
Description: NF16471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16471_low_16
NF16471_low_16
[»] chr7 (9 HSPs)
chr7 (14-471)||(31171318-31171776)
chr7 (14-183)||(31152756-31152926)
chr7 (8-146)||(8900669-8900807)
chr7 (80-176)||(757865-757960)
chr7 (8-109)||(23944030-23944132)
chr7 (147-185)||(31152917-31152955)
chr7 (40-177)||(44754967-44755105)
chr7 (80-215)||(23944095-23944228)
chr7 (9-64)||(32138906-32138961)
[»] chr4 (4 HSPs)
chr4 (14-194)||(25062358-25062540)
chr4 (121-214)||(20512790-20512882)
chr4 (95-176)||(22050909-22050990)
chr4 (92-176)||(55897608-55897693)
[»] chr2 (8 HSPs)
chr2 (39-188)||(25606411-25606561)
chr2 (34-219)||(28282665-28282854)
chr2 (34-188)||(38576813-38576967)
chr2 (82-183)||(9050219-9050320)
chr2 (91-194)||(16576287-16576389)
chr2 (9-64)||(16576248-16576303)
chr2 (93-176)||(34176761-34176844)
chr2 (107-175)||(9050074-9050142)
[»] scaffold0136 (1 HSPs)
scaffold0136 (92-214)||(36907-37029)
[»] chr8 (8 HSPs)
chr8 (80-176)||(29969154-29969251)
chr8 (92-176)||(32166735-32166819)
chr8 (101-176)||(29093593-29093668)
chr8 (92-201)||(6803876-6803985)
chr8 (22-155)||(35574673-35574806)
chr8 (92-183)||(6630316-6630407)
chr8 (95-217)||(37010282-37010403)
chr8 (9-65)||(32166655-32166711)
[»] chr5 (7 HSPs)
chr5 (92-176)||(41264430-41264515)
chr5 (91-217)||(2243250-2243374)
chr5 (91-166)||(5205471-5205546)
chr5 (93-176)||(7215403-7215486)
chr5 (85-202)||(40483712-40483829)
chr5 (34-64)||(17736799-17736829)
chr5 (15-64)||(7215322-7215371)
[»] chr1 (10 HSPs)
chr1 (8-99)||(10775127-10775219)
chr1 (98-176)||(7104322-7104400)
chr1 (125-181)||(10775069-10775125)
chr1 (9-64)||(46080971-46081026)
chr1 (14-64)||(44330463-44330513)
chr1 (80-173)||(5500740-5500833)
chr1 (107-176)||(49897927-49897996)
chr1 (144-176)||(3367839-3367871)
chr1 (78-166)||(7104461-7104549)
chr1 (15-43)||(44342226-44342254)
[»] chr6 (4 HSPs)
chr6 (82-217)||(32047191-32047325)
chr6 (9-141)||(32342521-32342655)
chr6 (83-176)||(7556040-7556134)
chr6 (92-172)||(20067977-20068057)
[»] chr3 (4 HSPs)
chr3 (29-114)||(31758193-31758278)
chr3 (91-158)||(42091892-42091959)
chr3 (14-64)||(54437806-54437856)
chr3 (91-176)||(51260560-51260643)


Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 14 - 471
Target Start/End: Original strand, 31171318 - 31171776
Alignment:
14 gaagaagattgatgtttttaagatgaaaatggtaattggttgtaagaaaaaccaaaatgatgaagtctacattatcacttgatgaattggggataattta 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
31171318 gaagaagattgatgtttttaagatgaaaatggtaattggttgtaagaaaaaccaaaatgatgaagtctacattatcacttgatgaattgggggtaattta 31171417  T
114 cctataataacaagtaggattcgattatgaaacgaaagagatggagatcacattttgaatgaaacagatgtagaagattgaagtttttaaagatgaaaat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
31171418 cctataataacaagtaggattcgattatgaaacgaaagagatggaaatcacattttgaatgaaacagatgtagaagattgaagtttctaaagatgaaaat 31171517  T
214 ggtatttaattgcaagnnnnnnnnnnnnnnnnnnnnnnnntatacccctaaatcattaagcagtaatctag-aataaaacactttctattgtccacatca 312  Q
    ||||||||||||||||                        ||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||    
31171518 ggtatttaattgcaagaaaattaaaagataaaagaaaaaatatacccctaaatcattaagcagtaatctagaaaaaaaacactttctattgtccacgtca 31171617  T
313 taaaaatggatggaaagctgacatcaaatattaaaatagtgggagcttttgaattacaacaacataattttnnnnnnnnncaaaatatgaatggactaag 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||         ||||||||||||||||||||    
31171618 taaaaatggatggaaagctgacatcaaatattaaaatagtgggagcttttgaattacaacaacataa-tttaaaaaaaaacaaaatatgaatggactaag 31171716  T
413 -nnnnnnnnctatattacaaggacaaaatgtgaattttaccctaattgtaataatatact 471  Q
             ||||||||||||||||||||||||||||||||||||| |||||||||||||    
31171717 aaaaaaaaactatattacaaggacaaaatgtgaattttaccctaatcgtaataatatact 31171776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 14 - 183
Target Start/End: Original strand, 31152756 - 31152926
Alignment:
14 gaagaagattgatgtttttaagatgaaaatggtaattggttgtaagaaaa-accaaaatgatgaagtctacattatcacttgatgaattggggataattt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
31152756 gaagaagattgatgtttttaagatgaaaatggtaattggttgtatgaaaaaaccaaaatgatgaagtctacattatcacttgatgaattgggggtaattt 31152855  T
113 acctataataacaagtaggattcgattatgaaacgaaagagatggagatcacattttgaatgaaacagatg 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31152856 acctataataacaagtaggattcgattatgaaacgaaagagatggagatcacattttgaatgaaacagatg 31152926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 8 - 146
Target Start/End: Original strand, 8900669 - 8900807
Alignment:
8 agagaagaagaagattgatgtttttaagatgaaaatggtaattggttgtaag-aaaaaccaaaatgatgaagtctacattatcacttgatgaattgggga 106  Q
    ||||| ||||||| ||| |||| || |||| ||||||||||||  ||||||| |||||| |||||| ||||| ||||||||||  ||||||||||||||     
8900669 agagatgaagaagtttgttgttcttgagataaaaatggtaatttattgtaagaaaaaacaaaaatgttgaagcctacattatccattgatgaattgggg- 8900767  T
107 taatttacctataataacaagtaggattcgattatgaaac 146  Q
    ||||||| |  ||||||||||||| |||||||||||||||    
8900768 taatttatccctaataacaagtagaattcgattatgaaac 8900807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 80 - 176
Target Start/End: Original strand, 757865 - 757960
Alignment:
80 ctacattatcacttgatgaattggggataatttacctataataacaagtaggattcgattatgaaacgaaagagatggagatcacattttgaatgaa 176  Q
    |||| |||||| |||||||||| |||||||||||| | |||||| ||||||||||| |||||  || ||| |||||| ||||||||| |||||||||    
757865 ctactttatcatttgatgaatttgggataatttacat-taataataagtaggattcaattatagaatgaaggagatgaagatcacatgttgaatgaa 757960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 23944132 - 23944030
Alignment:
8 agagaagaagaagattgatgtttttaagatgaaaatggtaattggttgtaagaaaaacca-aaatgatgaagtctacattatcacttgatgaattgggga 106  Q
    ||||||||||||| |||||||| ||||||||||||||| || |  |||||||||||| |  ||||| |||   |||||||| | |||||||||||| |||    
23944132 agagaagaagaagtttgatgttcttaagatgaaaatggcaactaattgtaagaaaaaacttaaatggtgagacctacattaccccttgatgaattgagga 23944033  T
107 taa 109  Q
    |||    
23944032 taa 23944030  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 31152917 - 31152955
Alignment:
147 gaaagagatggagatcacattttgaatgaaacagatgta 185  Q
    |||| ||||||||||||||||||||||||||||||||||    
31152917 gaaacagatggagatcacattttgaatgaaacagatgta 31152955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 177
Target Start/End: Complemental strand, 44755105 - 44754967
Alignment:
40 aaatggtaattggttgtaagaaaaa-ccaaaatgatgaagtctacattatcacttgatgaattggggataatttacctataataacaagtaggattcgat 138  Q
    ||||| || ||| |||||||||||| |||||||  ||||  |||||||||| ||||||||||| | |  ||||||||  |||||| |||  | |||||||    
44755105 aaatgatatttgattgtaagaaaaaaccaaaatagtgaaacctacattatcccttgatgaattcgaggcaatttacccctaataataagccgaattcgat 44755006  T
139 tatgaaacgaaagagatggagatcacattttgaatgaaa 177  Q
    |||| | | || |||||| ||||||||| ||||||||||    
44755005 tatggatcaaaggagatgaagatcacatgttgaatgaaa 44754967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 215
Target Start/End: Complemental strand, 23944228 - 23944095
Alignment:
80 ctacattatcacttgatgaattggggataatttacctataataacaagtaggattcgattatgaaacgaaagagatggagatcacattttgaatgaaaca 179  Q
    |||||||||| ||||||||||| ||||| | |||||  | || | ||||| ||||||||| || ||  || |||||||| ||||||| |||||||||| |    
23944228 ctacattatcccttgatgaatttgggatga-ttacccctgatgataagtatgattcgattctggaataaaggagatggaaatcacatgttgaatgaaaga 23944130  T
180 gatgtagaagattgaagtttttaaagatgaaaatgg 215  Q
    || | ||||| |||| ||| || |||||||||||||    
23944129 gaagaagaagtttgatgttctt-aagatgaaaatgg 23944095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 32138906 - 32138961
Alignment:
9 gagaagaagaagattgatgtttttaagatgaaaatggtaattggttgtaagaaaaa 64  Q
    |||| ||||||  |||||||| ||||||||||||||||||||| || |||||||||    
32138906 gagatgaagaattttgatgttcttaagatgaaaatggtaattgattttaagaaaaa 32138961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 14 - 194
Target Start/End: Complemental strand, 25062540 - 25062358
Alignment:
14 gaagaagattgatgtttttaagatgaaaatggtaattggttgtaagaaaaa--ccaaaatgatgaagtctacattatcacttgatgaattggggataatt 111  Q
    ||||||| ||||| || || ||||||||| |||||||| ||||||||||||  ||||| || ||||| |||||||||  |||||||||||| || |||||    
25062540 gaagaagtttgatattcttgagatgaaaacggtaattgattgtaagaaaaaaaccaaattggtgaagcctacattattccttgatgaattgagggtaatt 25062441  T
112 tacctataataacaagtaggattcgattatgaaacgaaagagatggagatcacattttgaatgaaacagatgtagaagattga 194  Q
    ||||  ||||||||||||||||| ||||||| ||| || |||||| ||||||||| || |||||| |||||| ||||| ||||    
25062440 tacccctaataacaagtaggatttgattatggaacaaaggagatgaagatcacatgtttaatgaagcagatgaagaagtttga 25062358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 121 - 214
Target Start/End: Original strand, 20512790 - 20512882
Alignment:
121 taacaagtaggattcgattatgaaacgaaagagatggagatcacattttgaatgaaacagatgtagaagattgaagtttttaaagatgaaaatg 214  Q
    |||||| || ||||||||||||||||||| || |||||||| |||| || ||||||  ||||| ||||| |||| |||| | ||||||||||||    
20512790 taacaaatatgattcgattatgaaacgaaggatatggagattacatgttaaatgaagaagatgaagaagtttgatgtttat-aagatgaaaatg 20512882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 22050990 - 22050909
Alignment:
95 atgaattggggataatttacctataataacaagtaggattcgattatgaaacgaaagagatggagatcacattttgaatgaa 176  Q
    ||||||||||| |||||||||  |||| | || || ||||||||| ||||| ||| |||||| ||||||||| |||||||||    
22050990 atgaattgggggtaatttacccttaatgataaatatgattcgattctgaaaggaatgagatgaagatcacatgttgaatgaa 22050909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 55897693 - 55897608
Alignment:
92 ttgatgaattggggataatttacctataataacaagtaggattcgattatgaaacg-aaagagatggagatcacattttgaatgaa 176  Q
    ||||||||||| ||||| ||||||  ||||||||||||| |||  ||| || |||| ||||||||| |||||| || |||||||||    
55897693 ttgatgaattgaggatagtttacccttaataacaagtagaatttaattttggaacgaaaagagatgaagatcatatgttgaatgaa 55897608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 39 - 188
Target Start/End: Complemental strand, 25606561 - 25606411
Alignment:
39 aaaatggtaattggttgtaagaaaa-accaaaatgatgaagtctacattatcacttgatgaattggggataatttacctataataacaagtaggattcga 137  Q
    |||||| |||||| ||||||||||| || |||||| |||| ||||| |||||   |||||||||| || |||||||||  |||||||||||||||||||     
25606561 aaaatgctaattgattgtaagaaaagactaaaatggtgaaatctacgttatcttctgatgaattgagggtaatttacccttaataacaagtaggattcgt 25606462  T
138 ttatgaaacgaaagagatggagatcacattttgaatgaaacagatgtagaa 188  Q
    ||||| |||||| |||||| | |||| || |||||||||||||||| ||||    
25606461 ttatggaacgaaggagatgtatatcatatgttgaatgaaacagatgaagaa 25606411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 34 - 219
Target Start/End: Complemental strand, 28282854 - 28282665
Alignment:
34 agatgaaaatggtaattggttgtaagaaaaac-caaaatgatgaagtctacatta-----tcacttgatgaattggggataatttacctataataacaag 127  Q
    ||||||||||| |||||| ||||||||||||  ||||||| ||||| ||||||||     ||| |||||||||||  | |||||||||  ||||||||||    
28282854 agatgaaaatgataattgattgtaagaaaaaatcaaaatggtgaagcctacattaattattca-ttgatgaattgacggtaatttacccctaataacaag 28282756  T
128 taggattcgattatgaaacgaaagagatggagatcacattttgaatgaaacagatgtagaagattgaagtttttaaagatgaaaatggtatt 219  Q
    ||  ||| ||||||| |||||| |||||||||||||||| ||||||||| |||||  ||||| |||| | || |  ||||||||||||||||    
28282755 taaaatttgattatggaacgaatgagatggagatcacatattgaatgaagcagataaagaagtttgatg-ttatggagatgaaaatggtatt 28282665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 34 - 188
Target Start/End: Original strand, 38576813 - 38576967
Alignment:
34 agatgaaaatggtaattggttgtaagaaaaaccaaaat-gatgaagtctacattatcacttgatgaattggggataatttacctataataacaagtagga 132  Q
    ||||||||||||||| || |||||||||||| |   || ||||| | |||||||| | ||| ||||||||||| ||||||||   |||| |||| || ||    
38576813 agatgaaaatggtaactgattgtaagaaaaaaccttatcgatgaggcctacattacccctttatgaattgggg-taatttactcctaatgacaaatatga 38576911  T
133 ttcgattatgaaacgaaagagatggagatcacattttgaatgaaacagatgtagaa 188  Q
    || |||||||  |||||||||||||| ||||||| |||||||||| ||||| ||||    
38576912 tttgattatggtacgaaagagatggaaatcacatgttgaatgaaagagatgaagaa 38576967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 183
Target Start/End: Original strand, 9050219 - 9050320
Alignment:
82 acattatcacttgatgaattggggataatttacctataataacaagtaggattcgattatgaaacgaaagagatggagatcacattttgaatgaaacaga 181  Q
    |||||||| |||||||||||| || |||||||||| |||| || ||||||||||||||||||||| ||  ||||| | |||| || || ||||||| |||    
9050219 acattatctcttgatgaattgagggtaatttacctctaatgactagtaggattcgattatgaaacaaagaagatgtaaatcaaatgttaaatgaaagaga 9050318  T
182 tg 183  Q
    ||    
9050319 tg 9050320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 91 - 194
Target Start/End: Complemental strand, 16576389 - 16576287
Alignment:
91 cttgatgaattggggataatttacctataataacaagtaggattcgattatgaaacgaaagagatggagatcacattttgaatgaaacagatgtagaaga 190  Q
    ||||||||||||||  |||||||||  |||| | ||||| ||||||||| || |||||| |||| ||||||||||| |||||||||  ||||| |||||     
16576389 cttgatgaattgggt-taatttacccctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagt 16576291  T
191 ttga 194  Q
    ||||    
16576290 ttga 16576287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 16576303 - 16576248
Alignment:
9 gagaagaagaagattgatgtttttaagatgaaaatggtaattggttgtaagaaaaa 64  Q
    |||| ||||||| |||||||| || ||| |||||||||||||| ||||||||||||    
16576303 gagatgaagaagtttgatgttcttgagaggaaaatggtaattgattgtaagaaaaa 16576248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 176
Target Start/End: Complemental strand, 34176844 - 34176761
Alignment:
93 tgatgaattggggataatttacctataataacaagtaggattcgattatgaaacgaaagagatggagatcacattttgaatgaa 176  Q
    ||||||||||||||||||| |    |||| | || || |||||||||||||||||||||||||| |||||| || || ||||||    
34176844 tgatgaattggggataattcaatcctaatgaaaaatatgattcgattatgaaacgaaagagatgaagatcatatgttaaatgaa 34176761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 9050074 - 9050142
Alignment:
107 taatttacctataataacaagtaggattcgattatgaaacgaaagagatggagatcacattttgaatga 175  Q
    |||||||||  |||| ||||| | ||||||||| || |||||| ||||||||||||| || ||||||||    
9050074 taatttacccttaatgacaagcatgattcgattttgtaacgaatgagatggagatcatatgttgaatga 9050142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 92 - 214
Target Start/End: Original strand, 36907 - 37029
Alignment:
92 ttgatgaattggggataatttacctataataacaagtaggattcgattatgaaacgaaagagatggagatcacattttgaatgaaacagatgtagaagat 191  Q
    |||||||||||| | ||||||||  ||||||| |||||||||||||||||||||| || |||||| ||||||||| |||||| ||  ||||| ||||  |    
36907 ttgatgaattggaggtaatttacacataataataagtaggattcgattatgaaacaaatgagatgaagatcacatgttgaataaacgagatgaagaaatt 37006  T
192 tgaagtttttaaagatgaaaatg 214  Q
    ||| || ||| ||||||||||||    
37007 tgatgtgttttaagatgaaaatg 37029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 80 - 176
Target Start/End: Complemental strand, 29969251 - 29969154
Alignment:
80 ctacattatcacttgatgaattggggataatttacctat-aataacaagtaggattcgattatgaaacgaaagagatggagatcacattttgaatgaa 176  Q
    |||||||| | |||||||||||| ||||||||||||  | ||| |||||||| ||||||||||| ||||||||||||| | ||||||| |||||||||    
29969251 ctacattaccccttgatgaattgtggataatttaccccttaatgacaagtagaattcgattatggaacgaaagagatgaatatcacatgttgaatgaa 29969154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 92 - 176
Target Start/End: Original strand, 32166735 - 32166819
Alignment:
92 ttgatgaattggggataatttacctataataacaagtaggattcgattatgaaacgaaagagatggagatcacattttgaatgaa 176  Q
    |||||||||||||  |||||||||| |||| ||||||| ||||||||| || ||||||||||||| | ||||||| || ||||||    
32166735 ttgatgaattgggtgtaatttacctctaatgacaagtacgattcgattttggaacgaaagagatgtaaatcacatgttaaatgaa 32166819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 176
Target Start/End: Complemental strand, 29093668 - 29093593
Alignment:
101 tggggataatttacctataataacaagtaggattcgattatgaaacgaaagagatggagatcacattttgaatgaa 176  Q
    ||||| |||||||||   |||| |||||| |||| ||||||| ||||||||||||||||||||||| |||||||||    
29093668 tgggggtaatttaccctcaataccaagtatgatttgattatggaacgaaagagatggagatcacatgttgaatgaa 29093593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 201
Target Start/End: Original strand, 6803876 - 6803985
Alignment:
92 ttgatgaattggggataatttacctataataacaagtaggattcgattatgaaacgaaagagatggagatcacattttgaatgaaacagatgtagaagat 191  Q
    |||||||||||||  |||||||||  |||| |||||||||||| |||| ||||| ||| |||||||| | |||||  ||||||||| ||||  ||||| |    
6803876 ttgatgaattgggagtaatttacccctaatgacaagtaggatttgattttgaaatgaaggagatggataacacatggtgaatgaaaaagataaagaagtt 6803975  T
192 tgaagttttt 201  Q
    ||| ||||||    
6803976 tgatgttttt 6803985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 155
Target Start/End: Original strand, 35574673 - 35574806
Alignment:
22 ttgatgtttttaagatgaaaatggtaattggttgtaagaaaaaccaaaatgatgaagtctacattatcacttgatgaattggggataatttacctataat 121  Q
    |||||||| ||||||||||||| |||| |  ||||||||||||||  |   |||| |||| ||||||   ||||||||||| || |||||||||  ||||    
35574673 ttgatgttcttaagatgaaaatcgtaactaattgtaagaaaaaccctatcaatgaggtctccattattcattgatgaattgagggtaatttaccgctaat 35574772  T
122 aacaagtaggattcgattatgaaacgaaagagat 155  Q
     |||| || ||||||||| || ||||||||||||    
35574773 gacaactatgattcgattttggaacgaaagagat 35574806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 92 - 183
Target Start/End: Original strand, 6630316 - 6630407
Alignment:
92 ttgatgaattggggataatttacctataataacaagtaggattcgattatgaaacgaaagagatggagatcacattttgaatgaaacagatg 183  Q
    ||||||||||| |  |||||||||  |||| |||||||||||| |||| ||||| ||| |||||||| | ||||| |||||||||| |||||    
6630316 ttgatgaattgagagtaatttacccctaatgacaagtaggatttgattttgaaatgaaggagatggataacacatgttgaatgaaaaagatg 6630407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 217
Target Start/End: Original strand, 37010282 - 37010403
Alignment:
95 atgaattggggataatttacctataataacaagtaggattcgattatgaaacgaaagagatggagatcacattttgaatgaaacagatgtagaagattga 194  Q
    ||||||||||| ||| || ||  ||||||||| || |||||||||||| || ||| ||||| |||||||||| || ||||||| | ||| | ||| ||||    
37010282 atgaattgggggtaaattgcccctaataacaaatatgattcgattatggaatgaaggagatagagatcacatgttaaatgaaagaaatgaataagtttga 37010381  T
195 agtttttaaagatgaaaatggta 217  Q
     ||||||  ||||||||||||||    
37010382 tgttttt-gagatgaaaatggta 37010403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 32166655 - 32166711
Alignment:
9 gagaagaagaagattgatgtttttaagatgaaaatggtaattggttgtaagaaaaac 65  Q
    |||| ||||||| |||||||| || ||||||||||| |||||| | |||||||||||    
32166655 gagatgaagaagtttgatgttcttgagatgaaaatgataattgatagtaagaaaaac 32166711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 41264515 - 41264430
Alignment:
92 ttgatgaattggggataatttacctataataacaagtaggattcgattatga-aacgaaagagatggagatcacattttgaatgaa 176  Q
    ||||||||||  || |||||||||| ||||||||| || ||||||||||||| ||||||||||||| ||||||||| |||||||||    
41264515 ttgatgaattaaggttaatttacctctaataacaattatgattcgattatgataacgaaagagatgaagatcacatgttgaatgaa 41264430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 91 - 217
Target Start/End: Original strand, 2243250 - 2243374
Alignment:
91 cttgatgaattggggataatttacctataataacaagtaggattcgattatgaaacgaaagagatggagatcacattttgaatgaaacagatgtagaaga 190  Q
    ||||||||||||||| |||||||||| |||| |||||||  |||||||| |  ||||||  ||||||||||||||| |||||||||  | ||| |||||     
2243250 cttgatgaattgggg-taatttacctctaatgacaagtaaaattcgattctagaacgaagaagatggagatcacatgttgaatgaaggatatgaagaagt 2243348  T
191 ttgaagtttttaaagatgaaaatggta 217  Q
    |||| ||| ||  ||||||||||||||    
2243349 ttgatgttctt-gagatgaaaatggta 2243374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 5205471 - 5205546
Alignment:
91 cttgatgaattggggataatttacctataataacaagtaggattcgattatgaaacgaaagagatggagatcacat 166  Q
    ||||||||||||||| || ||||||  |||| ||||  | ||||||||||| |||||||| |||||||||||||||    
5205471 cttgatgaattgggggtattttacccttaatgacaatcatgattcgattataaaacgaaatagatggagatcacat 5205546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 93 - 176
Target Start/End: Original strand, 7215403 - 7215486
Alignment:
93 tgatgaattggggataatttacctataataacaagtaggattcgattatgaaacgaaagagatggagatcacattttgaatgaa 176  Q
    |||||||||| | ||||||||| | ||||||||| || ||| || || || ||||||||||||| ||||||||| |||||||||    
7215403 tgatgaattgagaataatttacatctaataacaactatgatgcggttctggaacgaaagagatgaagatcacatgttgaatgaa 7215486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 85 - 202
Target Start/End: Complemental strand, 40483829 - 40483712
Alignment:
85 ttatcacttgatgaattggggataatttacctataataacaagtaggattcgattatgaaacgaaagagatggagatcacattttgaatgaaacagatgt 184  Q
    ||||| |||||||||||| || ||| |||||   ||| | ||||| ||||||||| || |||||| |||||| ||||||||| ||||||||   |||||     
40483829 ttatctcttgatgaattgagggtaaattacccccaatgataagtatgattcgattttggaacgaatgagatgaagatcacatgttgaatgagtgagatga 40483730  T
185 agaagattgaagttttta 202  Q
    ||||| |||| |||||||    
40483729 agaagtttgatgttttta 40483712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 64
Target Start/End: Original strand, 17736799 - 17736829
Alignment:
34 agatgaaaatggtaattggttgtaagaaaaa 64  Q
    |||||||||||||||||||||||||||||||    
17736799 agatgaaaatggtaattggttgtaagaaaaa 17736829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 7215322 - 7215371
Alignment:
15 aagaagattgatgtttttaagatgaaaatggtaattggttgtaagaaaaa 64  Q
    |||||| |||||||| || |||||||||||||| ||| ||||||||||||    
7215322 aagaagtttgatgttcttgagatgaaaatggtagttgattgtaagaaaaa 7215371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 10775219 - 10775127
Alignment:
8 agagaagaagaagattgatgtttttaagatgaaaatggtaattggttgtaag-aaaaaccaaaatgatgaagtctacattatcacttgatgaa 99  Q
    ||||| ||||||| |||||||| ||||||||||||||||||||| || |||| |||||| |||||| ||||||||||  |||| |||||||||    
10775219 agagatgaagaagtttgatgttcttaagatgaaaatggtaattgattctaagaaaaaactaaaatggtgaagtctaccatatctcttgatgaa 10775127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 176
Target Start/End: Complemental strand, 7104400 - 7104322
Alignment:
98 aattggggataatttacctataataacaagtaggattcgattatgaaacgaaagagatggagatcacattttgaatgaa 176  Q
    |||||||| ||| |||| | |||| ||||||| ||||||||| |||||||||||||||| | || |||| |||||||||    
7104400 aattgggggtaaattacttctaatgacaagtatgattcgattctgaaacgaaagagatgaatattacatgttgaatgaa 7104322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 10775125 - 10775069
Alignment:
125 aagtaggattcgattatgaaacgaaagagatggagatcacattttgaatgaaacaga 181  Q
    |||||||||||||||||| ||||||  | ||| ||||||||| ||||||||||||||    
10775125 aagtaggattcgattatggaacgaagaaaatgaagatcacatgttgaatgaaacaga 10775069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 46081026 - 46080971
Alignment:
9 gagaagaagaagattgatgtttttaagatgaaaatggtaattggttgtaagaaaaa 64  Q
    |||| ||||||| || ||||| || |||||||||||||||||| ||||||||||||    
46081026 gagatgaagaagtttaatgttcttgagatgaaaatggtaattgattgtaagaaaaa 46080971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 44330513 - 44330463
Alignment:
14 gaagaagattgatgtttttaagatgaaaatggtaattggttgtaagaaaaa 64  Q
    |||||||  |||||||||| | ||||||||||||| |||||||||||||||    
44330513 gaagaagtgtgatgtttttgatatgaaaatggtaaatggttgtaagaaaaa 44330463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 173
Target Start/End: Original strand, 5500740 - 5500833
Alignment:
80 ctacattatcacttgatgaattggggataatttacctataataacaagtaggattcgattatgaaacgaaagagatggagatcacattttgaat 173  Q
    |||||||| | ||||||||||||  ||||||||| || ||||||   |||  ||| |||| |||||||||  ||||||||||||||| ||||||    
5500740 ctacattacctcttgatgaattgaagataatttatctctaataatctgtattatttgattctgaaacgaataagatggagatcacatgttgaat 5500833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 176
Target Start/End: Complemental strand, 49897996 - 49897927
Alignment:
107 taatttacctataataacaagtaggattcgattatgaaacgaaagagatggagatcacattttgaatgaa 176  Q
    |||||||||| |||| |||| || ||||||||| |  ||| || |||||||||||||||| |||||||||    
49897996 taatttacctctaatgacaattatgattcgattctagaacaaaggagatggagatcacatgttgaatgaa 49897927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 176
Target Start/End: Complemental strand, 3367871 - 3367839
Alignment:
144 aacgaaagagatggagatcacattttgaatgaa 176  Q
    ||||||||||||||||||||||| |||||||||    
3367871 aacgaaagagatggagatcacatgttgaatgaa 3367839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 166
Target Start/End: Complemental strand, 7104549 - 7104461
Alignment:
78 gtctacattatcacttgatgaattggggataatttacctataataacaagtaggattcgattatgaaacgaaagagatggagatcacat 166  Q
    |||||||||| | ||||||||||||||| |  |||| | ||||| ||||||| ||||| ||| ||||||||| || ||| |||| ||||    
7104549 gtctacattaccccttgatgaattgggggtggtttagccataatgacaagtatgattcaattttgaaacgaaggaaatgtagattacat 7104461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 44342226 - 44342254
Alignment:
15 aagaagattgatgtttttaagatgaaaat 43  Q
    |||||||||||||||||||||||||||||    
44342226 aagaagattgatgtttttaagatgaaaat 44342254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 217
Target Start/End: Complemental strand, 32047325 - 32047191
Alignment:
82 acattatcacttgatgaattggggataatttacctataataacaagtaggattcgattatgaaacgaaagagatggagatcacattttgaatgaaacaga 181  Q
    |||||||| |||||||||||| ||||||||||||| |||| | ||||||||||| |||||| || |||  ||| | | |||| || |||||||||  |||    
32047325 acattatcccttgatgaattgaggataatttacctctaatgataagtaggattcaattatggaatgaagaagacgaatatcatatgttgaatgaatgaga 32047226  T
182 tgtagaagattgaagtttttaaagatgaaaatggta 217  Q
    || ||||| |||| ||| ||  ||||||||||||||    
32047225 tgaagaagtttgatgttctt-gagatgaaaatggta 32047191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 141
Target Start/End: Complemental strand, 32342655 - 32342521
Alignment:
9 gagaagaagaagattgatgtttttaagatgaaaatggtaattggttgtaaga-aaaaccaaaatgatgaagtctacattatcacttgatga--attgggg 105  Q
    |||| ||| ||| ||||||||||| ||||||||||| |||||| |||||||| ||||| |||||| ||| | |||||| ||| ||||||||  |||||||    
32342655 gagatgaaaaagtttgatgtttttgagatgaaaatgataattgattgtaagaaaaaactaaaatggtgaggcctacatcatcccttgatgaacattgggg 32342556  T
106 ataatttacctataataacaagtaggattcgattat 141  Q
     ||||||| |  |||| |||| || |||||||||||    
32342555 -taatttatcgctaatgacaaatatgattcgattat 32342521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 176
Target Start/End: Original strand, 7556040 - 7556134
Alignment:
83 cattatcacttgatgaattggggataatttacctataataacaagtaggattcgattatga-aacgaaagagatggagatcacattttgaatgaa 176  Q
    |||||||  ||||||||||| || ||||||| |  ||||||||| || ||||||||||||| ||||||||| | | ||||||||| |||||||||    
7556040 cattatccattgatgaattgagggtaatttatccctaataacaactatgattcgattatgataacgaaagataggaagatcacatgttgaatgaa 7556134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 20068057 - 20067977
Alignment:
92 ttgatgaattggggataatttacctataataacaagtaggattcgattatgaaacgaaagagatggagatcacattttgaa 172  Q
    |||||||||||  | |||||||||  |||  |||||||||||||||||||| |||||| |||  | ||||||||| |||||    
20068057 ttgatgaattgaaggtaatttacccttaaagacaagtaggattcgattatggaacgaatgaggggaagatcacatgttgaa 20067977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 31758278 - 31758193
Alignment:
29 ttttaagatgaaaatggtaattggttgtaagaaaaaccaaaatgatgaagtctacattatcacttgatgaattggggataatttac 114  Q
    ||||||||||||||||||||||| ||||||||||||| |||| | | || |||| |||||  ||||||||||  ||| ||||||||    
31758278 ttttaagatgaaaatggtaattgattgtaagaaaaacaaaaaaggtaaaatctatattattccttgatgaataaggggtaatttac 31758193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 158
Target Start/End: Original strand, 42091892 - 42091959
Alignment:
91 cttgatgaattggggataatttacctataataacaagtaggattcgattatgaaacgaaagagatgga 158  Q
    ||||| ||||||||| |||||||||  |||| ||||||| || | ||||||| |||||||||||||||    
42091892 cttgacgaattgggggtaatttacccctaatcacaagtaagacttgattatggaacgaaagagatgga 42091959  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 54437856 - 54437806
Alignment:
14 gaagaagattgatgtttttaagatgaaaatggtaattggttgtaagaaaaa 64  Q
    ||||||| ||||||||||| |||| |||||||||| || ||||||||||||    
54437856 gaagaagtttgatgtttttgagattaaaatggtaactgattgtaagaaaaa 54437806  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 176
Target Start/End: Original strand, 51260560 - 51260643
Alignment:
91 cttgatgaattggggataatttacctataataacaagtaggattcgattatgaaacgaaagagatggagatcacattttgaatgaa 176  Q
    ||||||||||||||| | |||||||| | || | ||||||||||||||| | ||| |||||| ||||| ||||||| |||||||||    
51260560 cttgatgaattgggg-tgatttacct-tcatgataagtaggattcgattctaaaatgaaagatatggaaatcacatgttgaatgaa 51260643  T

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