View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16471_low_19 (Length: 479)
Name: NF16471_low_19
Description: NF16471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16471_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 17 - 417
Target Start/End: Original strand, 16977336 - 16977736
Alignment:
| Q |
17 |
tgaaggggccgttgctggcggatcttgaatccacaagtatgagattgtgtgatgcttcagagatcgaaatggggtgacatgtgaatggtttttgttttga |
116 |
Q |
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| T |
16977336 |
tgaagggaccgttgctggcggatcttgaatccacaagtatgagattgtgtgatgcttcagagatcgagatggggtgacatgtgaatggtttttgttttga |
16977435 |
T |
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| Q |
117 |
tggacacaatgaaggagagtttacaatgtgaatcactaatcatcatcattagtgttttttgaaattcaggttaggaagtgcttaccgacttttctttagt |
216 |
Q |
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| T |
16977436 |
tggaaacaatgaaggaaagtttacaatgtgaatcactaatcatcatcattagtgttttttgaaattcaggttaggaagtgcttaccgacttttctttagt |
16977535 |
T |
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| Q |
217 |
tggttgcttaattgatttttgtagcaatgtttcatgtcagatattttgaacactatatgtttacaatcaatgaaagttataaaatttgaagaaagtttga |
316 |
Q |
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| T |
16977536 |
tggttgcttaattgatttttgtagcaatgtttcatgtcagatattttgaacactatatgtttacaatcaatgaaagttataaaatttgaagaaagtttga |
16977635 |
T |
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| Q |
317 |
tgattgtcctcttgtgcttacatctttcatattgagtatttataccttttgttgtattcaacatagttgttgcttggatcatttggattcgtaatatagt |
416 |
Q |
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| T |
16977636 |
tgattctcctcttgtgcttacatctttcatattgagtatttataccttttgttgtattcaacatagttgttgcttggatcatttggattcgtaatatagt |
16977735 |
T |
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| Q |
417 |
a |
417 |
Q |
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| T |
16977736 |
a |
16977736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 416 - 465
Target Start/End: Original strand, 16977763 - 16977812
Alignment:
| Q |
416 |
taattaacagctgcataacagagttataaaggctaacaagctgataactg |
465 |
Q |
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| T |
16977763 |
taattaacagctgcataacagagttataaaggctaacaagctgataactg |
16977812 |
T |
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