View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16471_low_2 (Length: 759)

Name: NF16471_low_2
Description: NF16471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16471_low_2
NF16471_low_2
[»] chr7 (6 HSPs)
chr7 (8-713)||(27831540-27832243)
chr7 (192-713)||(27848819-27849340)
chr7 (405-589)||(6788707-6788891)
chr7 (619-677)||(8646286-8646344)
chr7 (624-677)||(3146678-3146731)
chr7 (405-518)||(8615910-8616023)
[»] chr1 (1 HSPs)
chr1 (405-524)||(15594233-15594352)
[»] chr4 (1 HSPs)
chr4 (405-497)||(30774447-30774539)
[»] chr2 (2 HSPs)
chr2 (478-580)||(12246207-12246309)
chr2 (535-580)||(7541548-7541593)
[»] chr8 (1 HSPs)
chr8 (624-677)||(43744230-43744283)


Alignment Details
Target: chr7 (Bit Score: 543; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 8 - 713
Target Start/End: Complemental strand, 27832243 - 27831540
Alignment:
Q  8 aagaaaatcaaaatataaaccatatatataccattagaaaataaatctttatgtaaatgttttgcattcattgcatacaaaacagcaagacaacacagaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||     ||||||||||||||||||||||||    
T  27832243 aagaaaatcaaaatataaaccatatatataccattagaaaataaatcttcatgtaaattttttgcattcat-----acaaaacagcaagacaacacagaa 27832149  T
Q  108 aatcttaatggagaaaatcttaaa---gtataatcttaatggnnnnnnnnnnnnnnnnnnnnnctaatcaatcttggcaatagtgttttcaaacatactt 204  Q
    |||||||||||||||| | |||||   |||||||||||||||                     |||||||||||||||||||||||||||||||||||||    
T  27832148 aatcttaatggagaaattgttaaaaaagtataatcttaatggaaaaagaaaaaagaaaaaaaactaatcaatcttggcaatagtgttttcaaacatactt 27832049  T
Q  205 tcgagctccttcaaatgatcctgacgaacgtctagttcatgctggtgattctcgtcaagcagatttttggcaattgaaattgcagcattgatcttcgttt 304  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  27832048 tcgagctccttcaaatgatcctgaagaacgtctagttcatgctggtgattctcgtcaagcagatttttggcaattgtaattgcagcattgatcttcgttt 27831949  T
Q  305 tctctagtgtggagagtttcaactgaatattctgcttcttcaaagcagtttcannnnnnnaaacactgcgttctaatgcttttttccgttgagccattcg 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||| | | |||||||| |||||| |||||||||||||    
T  27831948 tctctagtgtggagagtttcaactgaatattctgcttcttcaaagcagtttcaattttgtaaacacagagatctaatgcatttttcagttgagccattcg 27831849  T
Q  405 taggaatttctcatcttcagcacggtaattatcagcttcttcaatcattttcttaatttcttctgttggtagtctttctttgtaattggttattattatc 504  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27831848 taggaatttctcatcttcagcacggtaattatcagcttcttcaatcattttcttaatttcttctgttgatagtctttctttgtaattggttattattatc 27831749  T
Q  505 ttatttgtattgccggtggaaacttctgtggcagagactgtcaaaatgccattttcatcgatagcaaaacatacataaaaaggatggcgacgaggcgcag 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27831748 ttatttgtattgccggtggaaacttctgtggcagagactgtcaaaatgccattttcatcgatagcaaaacatacataaaaaggatggcgacgaggcgcag 27831649  T
Q  605 gggtcaacccagtgagattaaaagaaccaagtagattgttgtcgctggctctagttctctccccctcataaaccctgataaagacaaaggtttggttatc 704  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27831648 gggtcaacccagtgagattaaaagaaccaagtagattgttgtcgctggctctagttctctccccctcataaaccctgataaagacaaaggtttggttatc 27831549  T
Q  705 ttcagttgt 713  Q
    |||||||||    
T  27831548 ttcagttgt 27831540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 192 - 713
Target Start/End: Complemental strand, 27849340 - 27848819
Alignment:
Q  192 ttcaaacatactttcgagctccttcaaatgatcctgacgaacgtctagttcatgctggtgattctcgtcaagcagatttttggcaattgaaattgcagca 291  Q
    ||||||||||||||| || |||| ||||||||||| | |||| |||| ||||||  ||| |||||| ||||||| |||||| || |||  ||||||| ||    
T  27849340 ttcaaacatactttcaagatcctccaaatgatcctcaagaacatctacttcatgaaggtcattctcatcaagcaaattttttgccattctaattgcaaca 27849241  T
Q  292 ttgatcttcgttttctctagtgtggagagtttcaactgaatattctgcttcttcaaagcagtttcannnnnnnaaacactgcgttctaatgcttttttcc 391  Q
    || |||||| | |||||| |||||||||| ||||| | |  |||||||||||| |||||||||||        |||  | ||  || ||||| ||||||     
T  27849240 ttcatcttcctgttctcttgtgtggagagcttcaagttagcattctgcttctttaaagcagtttcgattttataaatgcagctatccaatgcatttttca 27849141  T
Q  392 gttgagccattcgtaggaatttctcatcttcagcacggtaattatcagcttcttcaatcattttcttaatttcttctgttggtagtctttctttgtaatt 491  Q
    ||||||||||| |||||||||||||||||||| ||||||  || |||||||||| |||||  || |||||||||||||||| ||| ||||||||||||||    
T  27849140 gttgagccatttgtaggaatttctcatcttcatcacggtggttctcagcttcttgaatcaactttttaatttcttctgttgatagcctttctttgtaatt 27849041  T
Q  492 ggttattattatcttatttgtattgccggtggaaacttctgtggcagagactgtcaaaatgccattttcatcgatagcaaaacatacataaaaaggatgg 591  Q
     || ||||| |||| ||||||| |||| ||||| |||||  ||||||  ||||||||  | || ||| |||| || | ||||||||||| ||||||||||    
T  27849040 agtaattataatctcatttgtactgccagtggatacttccttggcagcaactgtcaatgtaccgtttccatcaattgtaaaacatacatcaaaaggatgg 27848941  T
Q  592 cgacgaggcgcaggggtcaacccagtgagattaaaagaaccaagtagattgttgtcgctggctctagttctctccccctcataaaccctgataaagacaa 691  Q
    |  ||| | ||||| |  || |||| |||| ||||||| |||||  |||||||||| |||||  |||||||||||||||||||||| ||||| ||| ||     
T  27848940 ccgcgaagggcaggagggaatccagagagagtaaaagagccaagccgattgttgtcactggccttagttctctccccctcataaacactgatcaaggcag 27848841  T
Q  692 aggtttggttatcttcagttgt 713  Q
    ||| ||||||||||||| ||||    
T  27848840 aggattggttatcttcacttgt 27848819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 405 - 589
Target Start/End: Original strand, 6788707 - 6788891
Alignment:
Q  405 taggaatttctcatcttcagcacggtaattatcagcttcttcaatcattttcttaatttcttctgttggtagtctttctttgtaattggttattattatc 504  Q
    ||||||||||| ||||||| |  ||||||| |||||||||| ||||| ||| |||||||| ||  |    |  ||||||||||||||||||||  | |||    
T  6788707 taggaatttcttatcttcaacgaggtaattctcagcttctttaatcaattttttaatttcgtcactacacaacctttctttgtaattggttatggtaatc 6788806  T
Q  505 ttatttgtattgccggtggaaacttctgtggcagagactgtcaaaatgccattttcatcgatagcaaaacatacataaaaaggat 589  Q
    | |||  ||||||| |||||   ||| || ||||| || |||||||| ||||||||||| |||| |||| |||||| ||||||||    
T  6788807 tcattcatattgcccgtggatttttcagtagcagaaacggtcaaaataccattttcatcaatagaaaaatatacatcaaaaggat 6788891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 619 - 677
Target Start/End: Original strand, 8646286 - 8646344
Alignment:
Q  619 agattaaaagaaccaagtagattgttgtcgctggctctagttctctccccctcataaac 677  Q
    ||||||||||||||||| ||||||||||| || ||||| | |||||| |||||||||||    
T  8646286 agattaaaagaaccaagcagattgttgtcacttgctcttgctctctcaccctcataaac 8646344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 624 - 677
Target Start/End: Original strand, 3146678 - 3146731
Alignment:
Q  624 aaaagaaccaagtagattgttgtcgctggctctagttctctccccctcataaac 677  Q
    |||||||||||| ||||||||||| || ||||| | |||||| |||||||||||    
T  3146678 aaaagaaccaagcagattgttgtcactagctcttgctctctcaccctcataaac 3146731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 405 - 518
Target Start/End: Original strand, 8615910 - 8616023
Alignment:
Q  405 taggaatttctcatcttcagcacggtaattatcagcttcttcaatcattttcttaatttcttctgttggtagtctttctttgtaattggttattattatc 504  Q
    ||||||||| ||||||||||| ||||| |  || ||||||| ||||| ||| |||||||| || |  | ||  |||||||||| |||||||||  ||||     
T  8615910 taggaatttttcatcttcagcgcggtactcctctgcttcttgaatcagttttttaatttcatcagccgataacctttctttgtcattggttatcgttatt 8616009  T
Q  505 ttatttgtattgcc 518  Q
    | ||||||||||||    
T  8616010 tcatttgtattgcc 8616023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 405 - 524
Target Start/End: Original strand, 15594233 - 15594352
Alignment:
Q  405 taggaatttctcatcttcagcacggtaattatcagcttcttcaatcattttcttaatttcttctgttggtagtctttctttgtaattggttattattatc 504  Q
    |||||||||||||||||||||||| || |  || ||||||| ||||||||| |||||||| | || ||  |  |||||||||| |||||||||| | |||    
T  15594233 taggaatttctcatcttcagcacgatattcctcggcttcttgaatcatttttttaatttcatatgctgacaacctttctttgtcattggttattgtgatc 15594332  T
Q  505 ttatttgtattgccggtgga 524  Q
    |  ||||||||||| |||||    
T  15594333 tcgtttgtattgccagtgga 15594352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 405 - 497
Target Start/End: Original strand, 30774447 - 30774539
Alignment:
Q  405 taggaatttctcatcttcagcacggtaattatcagcttcttcaatcattttcttaatttcttctgttggtagtctttctttgtaattggttat 497  Q
    ||||||||||||||||||||||||||| |    |||||||| ||||||||| |||||||||||| | | ||  ||||||||||  ||||||||    
T  30774447 taggaatttctcatcttcagcacggtactctctagcttcttgaatcattttgttaatttcttctctggataacctttctttgtcgttggttat 30774539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 478 - 580
Target Start/End: Complemental strand, 12246309 - 12246207
Alignment:
Q  478 ctttctttgtaattggttattattatcttatttgtattgccggtggaaacttctgtggcagagactgtcaaaatgccattttcatcgatagcaaaacata 577  Q
    |||||||||||||| |||||| | |||| ||||| |||||| |  |||   |  || ||||| ||||||||||| ||||||||| | |||||||||||||    
T  12246309 ctttctttgtaattagttattgtaatctcatttgaattgccagaagaactattcgtagcagaaactgtcaaaataccattttcaccaatagcaaaacata 12246210  T
Q  578 cat 580  Q
    |||    
T  12246209 cat 12246207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 535 - 580
Target Start/End: Original strand, 7541548 - 7541593
Alignment:
Q  535 gcagagactgtcaaaatgccattttcatcgatagcaaaacatacat 580  Q
    ||||| ||||||||||| ||||||||||| ||||||||||| ||||    
T  7541548 gcagaaactgtcaaaataccattttcatcaatagcaaaacaaacat 7541593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 624 - 677
Target Start/End: Original strand, 43744230 - 43744283
Alignment:
Q  624 aaaagaaccaagtagattgttgtcgctggctctagttctctccccctcataaac 677  Q
    |||||||||||| ||||||||||| || ||||| | |||||| |||||||||||    
T  43744230 aaaagaaccaagcagattgttgtcacttgctcttgctctctcaccctcataaac 43744283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University