View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16471_low_21 (Length: 450)
Name: NF16471_low_21
Description: NF16471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16471_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 156 - 433
Target Start/End: Complemental strand, 43231970 - 43231693
Alignment:
| Q |
156 |
ggcattttggagagttgtgagtaattaaaaggcgcatagagcagtttcctttccaattgtttgtcgacatcattcaaaacattcaaattatttgaaacgg |
255 |
Q |
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| T |
43231970 |
ggcattctggagagttgtgagtgattaaaaggcgcatagagcagtttcctttccaattgtttgtcgacatcattcgaaacattcaaattatttgaaacgg |
43231871 |
T |
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| Q |
256 |
cattgagcacctttcaagatatacacacttgggaaatgataaataaaaccaaaagttatttcattaatgcccaacaaatggatcttactggttcgtcaac |
355 |
Q |
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| T |
43231870 |
cattgagcacctttcaagctatacacacttgggaaatgataaataaaaccaaaagttatttcattaatgcccaacaaatggatcttactggctcgtcaac |
43231771 |
T |
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| Q |
356 |
ctgataatttccactagaatagaacnnnnnnnngctaattatagcactgttgccacactttattctcctcctctcctt |
433 |
Q |
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| T |
43231770 |
ctgataatttccactagaatagaacttttttttgctaattatagcactgttgccacactttattctcctcctctcctt |
43231693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 43232018 - 43231969
Alignment:
| Q |
31 |
tatatacaagtaagatgacccgtaaacataatatgatattatggttttgg |
80 |
Q |
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| T |
43232018 |
tatatacaagtaagatgacccataaacataatatgatattatggttttgg |
43231969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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