View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16471_low_22 (Length: 441)

Name: NF16471_low_22
Description: NF16471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16471_low_22
NF16471_low_22
[»] chr6 (9 HSPs)
chr6 (161-424)||(1841304-1841567)
chr6 (18-202)||(6472553-6472738)
chr6 (19-131)||(6505967-6506080)
chr6 (168-260)||(1837345-1837437)
chr6 (225-278)||(6466027-6466080)
chr6 (19-111)||(6515702-6515795)
chr6 (70-127)||(1837455-1837512)
chr6 (222-260)||(6520013-6520051)
chr6 (392-425)||(1851036-1851069)
[»] chr7 (1 HSPs)
chr7 (83-260)||(9664752-9664929)
[»] chr4 (2 HSPs)
chr4 (83-260)||(13535776-13535953)
chr4 (152-200)||(49569924-49569972)


Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 161 - 424
Target Start/End: Complemental strand, 1841567 - 1841304
Alignment:
Q  161 ctgaattatgccagaaaatgcttcagaagtgatctcagaaagatggcaactcaacctgataggtgaagaagcatacaaaatccaattttgaccattgtta 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1841567 ctgaattatgccagaaaatgcttcagaagtgatctcagaaagatggcaactcaacctgataggtgaagaagcatacaaaattcaattttgaccattgtta 1841468  T
Q  261 tattgaaaagtatgcttttgagagaattattggaagaaaattaaaagagtgaatggcatggactgtagtgatggaaagaaaattatgcagcaaacatatt 360  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1841467 aattgaaaagtatgcttttgagagaattattggaagaaaattaaaagagtgaatggcatggactgtagtgatggaaagaaaattatgtagcaaacatatt 1841368  T
Q  361 gtactttatccataatcttcaccatctgataatatttcaattgagtgtggctcaattcgaagct 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1841367 gtactttatccataatcttcaccatctgataatatttcaattgagtgtggctcaattcgaagct 1841304  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 6472738 - 6472553
Alignment:
Q  18 taaatcacctgaaacttgcttctcaaacttatactcaacac-aaatggttctccaaatatagcaacacctgacacagggtaacaagaactaaacccgtca 116  Q
    ||||||||||||| ||| ||||||||||||||||||||||| ||| ||||||   |  |||||  ||||||||| |||||||||||||||  ||   |||    
T  6472738 taaatcacctgaacctttcttctcaaacttatactcaacactaaacggttctttgagcatagcttcacctgacaaagggtaacaagaactgtacttatca 6472639  T
Q  117 cgaacagcttcgtttgttggtctaaaatccagcaacaaagccatctgaattatgccagaaaatgcttcagaagtgatctcagaaag 202  Q
     | ||| |||||||| |||   |  ||||| |||||||||| ||| |||| ||||| ||||| || ||||||||||||||||||||    
T  6472638 aggacatcttcgttttttgaattggaatccggcaacaaagctatccgaatcatgccggaaaaggcctcagaagtgatctcagaaag 6472553  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 6505967 - 6506080
Alignment:
Q  19 aaatcacctgaaacttgcttctcaaacttatactcaacac-aaatggttctccaaatatagcaacacctgacacagggtaacaagaactaaacccgtcac 117  Q
    |||||||||||||| | ||||||||||||||||||||||| |||||||||||  | | |||||  |||||  | ||||| |||||||||||| | ||||     
T  6505967 aaatcacctgaaacattcttctcaaacttatactcaacacaaaatggttctctgagtttagcattacctgctaaagggtgacaagaactaaatctgtcaa 6506066  T
Q  118 gaacagcttcgttt 131  Q
    ||||||||||||||    
T  6506067 gaacagcttcgttt 6506080  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 168 - 260
Target Start/End: Complemental strand, 1837437 - 1837345
Alignment:
Q  168 atgccagaaaatgcttcagaagtgatctcagaaagatggcaactcaacctgataggtgaagaagcatacaaaatccaattttgaccattgtta 260  Q
    |||||||||||| ||||||||||||| | |||| ||  |  ||| ||||| | ||| ||||||||||||||||||||| ||||||||||||||    
T  1837437 atgccagaaaatacttcagaagtgattttagaacgacagtgactaaaccttacaggcgaagaagcatacaaaatccaagtttgaccattgtta 1837345  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 6466027 - 6466080
Alignment:
Q  225 gaagaagcatacaaaatccaattttgaccattgttatattgaaaagtatgcttt 278  Q
    ||||||||||||||||||||  |||||||||||||| | |||||||||||||||    
T  6466027 gaagaagcatacaaaatccatgtttgaccattgttaaactgaaaagtatgcttt 6466080  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 6515795 - 6515702
Alignment:
Q  19 aaatcacctgaaacttgcttctcaaacttatactcaacacaaatggtt-ctccaaatatagcaacacctgacacagggtaacaagaactaaacc 111  Q
    |||||||||||| ||| |||||||||||||||||||| |||||  ||| | | || | ||||| ||||||| | ||||||||||||||||||||    
T  6515795 aaatcacctgaacctttcttctcaaacttatactcaagacaaaacgtttcactaagtttagcatcacctgataaagggtaacaagaactaaacc 6515702  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 127
Target Start/End: Complemental strand, 1837512 - 1837455
Alignment:
Q  70 caaatatagcaacacctgacacagggtaacaagaactaaacccgtcacgaacagcttc 127  Q
    |||| ||||||||| |||||| |||||||||||||||||||| |||| ||||| ||||    
T  1837512 caaacatagcaacaactgacaaagggtaacaagaactaaacctgtcaagaacaacttc 1837455  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 260
Target Start/End: Complemental strand, 6520051 - 6520013
Alignment:
Q  222 ggtgaagaagcatacaaaatccaattttgaccattgtta 260  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  6520051 ggtgtagaagcatacaaaatccaactttgaccattgtta 6520013  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 425
Target Start/End: Complemental strand, 1851069 - 1851036
Alignment:
Q  392 atatttcaattgagtgtggctcaattcgaagctt 425  Q
    ||||||||||||||||||||||||||| ||||||    
T  1851069 atatttcaattgagtgtggctcaattccaagctt 1851036  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 83 - 260
Target Start/End: Complemental strand, 9664929 - 9664752
Alignment:
Q  83 acctgacacagggtaacaagaactaaacccgtcacgaacagcttcgtttgttggtctaaaatccagcaacaaagccatctgaattatgccagaaaatgct 182  Q
    |||||| | |||||||||||  ||||||  |||| |||||||||| ||| |||    | ||||| |||||||||| |||  |||||  ||| ||||||||    
T  9664929 acctgataaagggtaacaagtgctaaacttgtcaagaacagcttcattttttgaatcagaatccggcaacaaagcaatcctaattacaccacaaaatgct 9664830  T
Q  183 tcagaagtgatctcagaaagatggcaactcaacctgataggtgaagaagcatacaaaatccaattttgaccattgtta 260  Q
    ||||||||||||||||||| |     | ||||| ||||||| ||||||||||| ||||||||  ||||||||||||||    
T  9664829 tcagaagtgatctcagaaacaccatgattcaacatgataggagaagaagcatagaaaatccatgtttgaccattgtta 9664752  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 83 - 260
Target Start/End: Complemental strand, 13535953 - 13535776
Alignment:
Q  83 acctgacacagggtaacaagaactaaacccgtcacgaacagcttcgtttgttggtctaaaatccagcaacaaagccatctgaattatgccagaaaatgct 182  Q
    |||||| | |||||||||||  ||||||  |||| |||||||||| ||| |||    | ||||| |||||||||| |||  |||||  ||| ||||||||    
T  13535953 acctgataaagggtaacaagtgctaaacttgtcaagaacagcttcattttttgaatcagaatccggcaacaaagcaatcctaattacaccacaaaatgct 13535854  T
Q  183 tcagaagtgatctcagaaagatggcaactcaacctgataggtgaagaagcatacaaaatccaattttgaccattgtta 260  Q
    ||||||||||||||||||| |     | ||||| ||||||| ||||||||||| ||||||||  ||||||||||||||    
T  13535853 tcagaagtgatctcagaaacaccatgattcaacatgataggagaagaagcatagaaaatccatgtttgaccattgtta 13535776  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 49569924 - 49569972
Alignment:
Q  152 caaagccatctgaattatgccagaaaatgcttcagaagtgatctcagaa 200  Q
    |||||| |||||||||||||  ||||||| |||||||||||||||||||    
T  49569924 caaagctatctgaattatgcaggaaaatggttcagaagtgatctcagaa 49569972  T

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