View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16471_low_27 (Length: 373)
Name: NF16471_low_27
Description: NF16471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16471_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 31337673 - 31338035
Alignment:
| Q |
1 |
gcctcgaatatattgagtgtaagaaaattccctatagaatagaatgttttattgtgctatcaaaataaatgtgcaatatactttatgatagaataatcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31337673 |
gcctcgaatatattgagtgtaagaaaattccctatagaatagaatgttttattgtgctatcaaaataaatgtgcaatatactttatgatagaataatcca |
31337772 |
T |
|
| Q |
101 |
cgagttgtcattgacttattgtattggcacccaatcattttattatatcttttcttacctaatttcatgaaccttgcgtttatgatttttactctcaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31337773 |
cgagttgtcattgacttattgtattggcacccaatcattttattatatcttttcttacctaatttcatgaaccttgcgtttatgatttttactctcaaat |
31337872 |
T |
|
| Q |
201 |
gagcgtaaggcatcaaagtgtattatttatattgtcatcttatcattgtgaaattcagttcatgca-nnnnnnnaatcccaccacctatataaataattg |
299 |
Q |
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| T |
31337873 |
gagcgtaaggcatcaaagtgtattatttatattgtcttcttatcattgtgaaattcagttcatgcattttttttaatcccaccacctatataaataattg |
31337972 |
T |
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| Q |
300 |
aaatttggtcaaaaagtaatttgttacttacttttaagcctataattttattttcatctcact |
362 |
Q |
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| T |
31337973 |
aaatttggtcaaaaagtaatttgttacttacttttaagcctataattttattttcatttcact |
31338035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 31306125 - 31306367
Alignment:
| Q |
1 |
gcctcgaatatattgagtgtaagaaaattccctatagaatagaatgttttattgtgctatcaaaataaatgtgcaatatactttatgatagaataatcca |
100 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31306125 |
gcctcgtatatattgagtgtaagaaaattccttatagaatagaatgttttattgtgctatcaaa-taaatgtgcaatatactttatgatagaataatcca |
31306223 |
T |
|
| Q |
101 |
cgagttgtcattgacttattgtattggcacccaatcattttattatatcttttcttacctaatttcatgaaccttgcgtttatgatttttactctcaaat |
200 |
Q |
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||||||||| |||| ||||||||||||||| ||| |||||||| ||||||| ||||| || |||||||||||||||||||| |||||||||||||| |
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| T |
31306224 |
cgagttgtcgttgagttattgtattggcactaaataattttattttatctttccttacggaaattcatgaaccttgcgtttatatgttttactctcaaat |
31306323 |
T |
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| Q |
201 |
gagcgtaaggcatcaaagtgtattatttatattgtcatcttatc |
244 |
Q |
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| T |
31306324 |
ggccgtaaggcattaaagtgtattatttagattgtcttcttatc |
31306367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 274 - 362
Target Start/End: Original strand, 31306416 - 31306506
Alignment:
| Q |
274 |
aatcccaccacctatataaataa-ttgaa-atttggtcaaaaagtaatttgttacttacttttaagcctataattttattttcatctcact |
362 |
Q |
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| T |
31306416 |
aatcccactacctataaaaataacttgaatatttggttaaaaggttcttttttacttacttttaagcctataattttatttacatttcact |
31306506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 121
Target Start/End: Original strand, 25948534 - 25948603
Alignment:
| Q |
52 |
ttgtgctatcaaaataaatgtgcaatatactttatgatagaataatccacgagttgtcattgacttattg |
121 |
Q |
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| T |
25948534 |
ttgtgctagcaaaataagtgtgcaatataccttatgatagaatattgcatgagttgtcatttagttattg |
25948603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 31292886 - 31292956
Alignment:
| Q |
24 |
aaaattccctatagaatagaatgttttattgtgctatcaaaataaatgtgcaatatactttatgatagaat |
94 |
Q |
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||||| || |||| ||||||| | ||| |||| ||| |||||||||||||||| ||||| ||||||||||| |
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| T |
31292886 |
aaaatgccatatacaatagaacgattttttgtactagcaaaataaatgtgcaacatactgtatgatagaat |
31292956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 32625188 - 32625148
Alignment:
| Q |
41 |
agaatgttttattgtgctatcaaaataaatgtgcaatatac |
81 |
Q |
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|||||||||| || ||||| ||||||||||||||||||||| |
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| T |
32625188 |
agaatgttttgttatgctaccaaaataaatgtgcaatatac |
32625148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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