View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16471_low_28 (Length: 361)
Name: NF16471_low_28
Description: NF16471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16471_low_28 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 348
Target Start/End: Original strand, 38102327 - 38102657
Alignment:
| Q |
18 |
cataccttatccaacttcatttcatccttcaatggataatgatgttttgcaatggcagagtaaaattagacatcaaaagagagaatttttgtttactttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38102327 |
cataccttatccaacttcatttcatccttcaatggataatgatgttttgcaatggcagagtaaaattagacatcaaaagagagaatttttgtttactttc |
38102426 |
T |
|
| Q |
118 |
accggagcaccaaggcctgaaaatgaagattctataagggggaaaattattgaacaatgtcgtggttcgaggttttgcaaattcattgattgtagttacg |
217 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
38102427 |
actggagcaccaaggcctgaaaatgaagattctataagggggaaaattattgaacaatgtcgtggttcgaggttttgcaaattcattgattgtagttatg |
38102526 |
T |
|
| Q |
218 |
gtggagagaaatgtgatgatcctgttaatgttatgaaggtgtttggaaattctgtgttctctttgcaaccttctggtgattcatacacaagaagatcaat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38102527 |
gtggagagaaatgtgatgatcctgttaatgttatgaaggtgtttggaaattctgtgttctctttgcaaccttctggtgattcatacacaagaagatcaat |
38102626 |
T |
|
| Q |
318 |
ttttgattcaattttagctggttgtattcct |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
38102627 |
ttttgattcaattttagctggttgtattcct |
38102657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 1211273 - 1211314
Alignment:
| Q |
307 |
agaagatcaatttttgattcaattttagctggttgtattcct |
348 |
Q |
| |
|
|||||||||||||||||||| ||||| || |||||||||||| |
|
|
| T |
1211273 |
agaagatcaatttttgattcgattttggcgggttgtattcct |
1211314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 348
Target Start/End: Original strand, 41948524 - 41948561
Alignment:
| Q |
311 |
gatcaatttttgattcaattttagctggttgtattcct |
348 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||| |
|
|
| T |
41948524 |
gatcaatttttgattcaattttggcgggttgtattcct |
41948561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 348
Target Start/End: Complemental strand, 54180144 - 54180091
Alignment:
| Q |
295 |
gattcatacacaagaagatcaatttttgattcaattttagctggttgtattcct |
348 |
Q |
| |
|
||||| |||||||| ||||||| ||||||||| ||||| || |||||||||||| |
|
|
| T |
54180144 |
gattcttacacaaggagatcaacttttgattcgattttggcgggttgtattcct |
54180091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University