View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16471_low_30 (Length: 338)

Name: NF16471_low_30
Description: NF16471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16471_low_30
NF16471_low_30
[»] chr6 (2 HSPs)
chr6 (17-192)||(29645741-29645916)
chr6 (259-328)||(29645602-29645671)
[»] chr8 (9 HSPs)
chr8 (70-125)||(28731606-28731661)
chr8 (48-149)||(28711895-28711996)
chr8 (48-149)||(28719242-28719343)
chr8 (48-149)||(28726884-28726985)
chr8 (70-125)||(28626001-28626056)
chr8 (70-125)||(28701015-28701070)
chr8 (70-163)||(28636761-28636854)
chr8 (49-125)||(28644474-28644550)
chr8 (76-125)||(28740551-28740600)
[»] scaffold0591 (1 HSPs)
scaffold0591 (70-125)||(5228-5283)


Alignment Details
Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 29645916 - 29645741
Alignment:
Q  17 acattttgaaagcttctggattgttgatgttggaaagacgagacacgatgtcgtcggccgagagttgagcacctttaccagctttttgcaacacttcaaa 116  Q
    ||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29645916 acattttgaaagcttttggattgttaatgttggaaagacgggacacgatgtcgtcggccgagagttgagcacctttaccggctttttgcaacacttcaaa 29645817  T
Q  117 aacaccaagatcaattgaacattggagtgccatgggaagtgcaatagaaattgcaagctgcattgcatacatgaag 192  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29645816 aacaccaagatcaattgcacattggagtgccatgggaagtgcaatagaaattgcaatctgcattgcatacatgaag 29645741  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 259 - 328
Target Start/End: Complemental strand, 29645671 - 29645602
Alignment:
Q  259 caattgagattctttgaatttaaaaggctggccatattgacttgaatgtgtatattcctatctccctatg 328  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  29645671 caattgagattctttgaatttaaaaggctggccatatcgacttgattgtgtatattcctatctccctatg 29645602  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 28731606 - 28731661
Alignment:
Q  70 tcggccgagagttgagcacctttaccagctttttgcaacacttcaaaaacaccaag 125  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28731606 tcggcagagagttgagcacctttaccagctttttgcaacacatcaaaaacaccaag 28731661  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 48 - 149
Target Start/End: Original strand, 28711895 - 28711996
Alignment:
Q  48 ggaaagacgagacacgatgtcgtcggccgagagttgagcacctttaccagctttttgcaacacttcaaaaacaccaagatcaattgaacattggagtgcc 147  Q
    ||||||||| ||| | || || ||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||| ||| | | |||||||||    
T  28711895 ggaaagacgggacgcaatctcatcggcagagagttgagcacctttgccagctttttgcaacacatcaaatacaccaagctcagttgcagaatggagtgcc 28711994  T
Q  148 at 149  Q
    ||    
T  28711995 at 28711996  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 48 - 149
Target Start/End: Original strand, 28719242 - 28719343
Alignment:
Q  48 ggaaagacgagacacgatgtcgtcggccgagagttgagcacctttaccagctttttgcaacacttcaaaaacaccaagatcaattgaacattggagtgcc 147  Q
    ||||||||| ||| | || || ||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||| ||| | | |||||||||    
T  28719242 ggaaagacgggacgcaatctcatcggcagagagttgagcacctttgccagctttttgcaacacatcaaatacaccaagctcagttgcagaatggagtgcc 28719341  T
Q  148 at 149  Q
    ||    
T  28719342 at 28719343  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 48 - 149
Target Start/End: Original strand, 28726884 - 28726985
Alignment:
Q  48 ggaaagacgagacacgatgtcgtcggccgagagttgagcacctttaccagctttttgcaacacttcaaaaacaccaagatcaattgaacattggagtgcc 147  Q
    ||||||||| ||| | || || ||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||| ||| | | |||||||||    
T  28726884 ggaaagacgggacgcaatctcatcggcagagagttgagcacctttgccagctttttgcaacacatcaaatacaccaagctcagttgcagaatggagtgcc 28726983  T
Q  148 at 149  Q
    ||    
T  28726984 at 28726985  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 28626001 - 28626056
Alignment:
Q  70 tcggccgagagttgagcacctttaccagctttttgcaacacttcaaaaacaccaag 125  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  28626001 tcggcagagagttgagcacctttaccagctttttgcaacacatcaaatacaccaag 28626056  T

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Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 28701015 - 28701070
Alignment:
Q  70 tcggccgagagttgagcacctttaccagctttttgcaacacttcaaaaacaccaag 125  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  28701015 tcggcagagagttgagcacctttaccagctttttgcaacacatcaaatacaccaag 28701070  T

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Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 70 - 163
Target Start/End: Original strand, 28636761 - 28636854
Alignment:
Q  70 tcggccgagagttgagcacctttaccagctttttgcaacacttcaaaaacaccaagatcaattgaacattggagtgccatgggaagtgcaatag 163  Q
    ||||| |||||||||||| |||| |||||||||||||| || |||||||||||||| ||| ||| | |||| |||||||| ||||  |||||||    
T  28636761 tcggcagagagttgagcatcttttccagctttttgcaaaacatcaaaaacaccaagctcagttgcagattgtagtgccattggaaacgcaatag 28636854  T

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Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 125
Target Start/End: Original strand, 28644474 - 28644550
Alignment:
Q  49 gaaagacgagacacgatgtcgtcggccgagagttgagcacctttaccagctttttgcaacacttcaaaaacaccaag 125  Q
    |||| ||| ||||| || || ||||| |||||||||||||||||||||| |||||||||||| ||||| ||||||||    
T  28644474 gaaatacgcgacacaatctcatcggcagagagttgagcacctttaccagttttttgcaacacatcaaatacaccaag 28644550  T

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Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 28740551 - 28740600
Alignment:
Q  76 gagagttgagcacctttaccagctttttgcaacacttcaaaaacaccaag 125  Q
    |||||||||||| |||||||||||||||||||||| ||||| ||||||||    
T  28740551 gagagttgagcatctttaccagctttttgcaacacatcaaatacaccaag 28740600  T

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Target: scaffold0591 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 5283 - 5228
Alignment:
Q  70 tcggccgagagttgagcacctttaccagctttttgcaacacttcaaaaacaccaag 125  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  5283 tcggcagagagttgagcacctttaccagctttttgcaacacatcaaatacaccaag 5228  T

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