View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16471_low_32 (Length: 304)
Name: NF16471_low_32
Description: NF16471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16471_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 20 - 291
Target Start/End: Complemental strand, 43741973 - 43741702
Alignment:
| Q |
20 |
tttttccccccatacaaacacactatgaagcattgctcctactgggttcttcaatgtcatttaaatatttcacaccattatgatccttttctttggtata |
119 |
Q |
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| T |
43741973 |
tttttccccccatacaaacacactatgaagcattgctcctactgggttcttcaatgtcatttaaatatttcacaccattatgatccttttctttggtata |
43741874 |
T |
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| Q |
120 |
aagaggacatatcccacactctttcaccatatcagttggtttaaactttgagcgataattgtatttgttgaactcaaaagcgaagttgtcagcacgaaag |
219 |
Q |
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| T |
43741873 |
aagaggacatatcccgcactctttcaccatatcagttggtttaaactttgagcgataattgtatttgttgaactcaaaagcgaagttgtcagcacgaaag |
43741774 |
T |
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| Q |
220 |
agcacgttttcgttaatgctttgaaagtccaattgatatttccatatgagtgtgtgactttggacggcattc |
291 |
Q |
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| T |
43741773 |
agcacgttgtcgttaatgctttgaaagtccaattgatatttccatatgaatgtgtgactttggacggcattc |
43741702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 37933215 - 37933161
Alignment:
| Q |
93 |
accattatgatccttttctttggtataaagaggacatatcccacactctttcacc |
147 |
Q |
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| T |
37933215 |
accattatcatcattttatttggtatacagaggacatattccacactctttcacc |
37933161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 19874052 - 19874094
Alignment:
| Q |
107 |
tttctttggtataaagaggacatatcccacactctttcaccat |
149 |
Q |
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| T |
19874052 |
tttctttagtataaagaggacatattccacactctttcaccat |
19874094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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