View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16471_low_35 (Length: 289)
Name: NF16471_low_35
Description: NF16471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16471_low_35 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 271
Target Start/End: Original strand, 28091856 - 28092111
Alignment:
| Q |
16 |
cttcaggtacaccggcgtatggctgataactcgttgtagttcactgatgaatagcggttataatgtcaatgattggcctatttgtctagctgtcctcatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28091856 |
cttcaggtacaccggcgtatggctgataactcgttgtagttcactgatgaatagcggttataatgtcaatgattggcctatttgtctagctgtcctcatt |
28091955 |
T |
|
| Q |
116 |
ttttacggtatagttgctcgtattgtggccttcatctgtctcatgatcacccaaaagaagtgatttaggtaggatatgaatgttggagatttcattcaca |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
28091956 |
ttttacggtatagttgctcgtattgtggccttcatctgtctcatgatcacccaaaagaagtgatttaggtaggatatgaatgttgaagatgtcattcaca |
28092055 |
T |
|
| Q |
216 |
tgtgtcttatcagctagggatagtttccaattttccaccagaatacatgatgctag |
271 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28092056 |
tgtgtgttatcagctagggatagtttccaattttccaccagaatacatgatgctag |
28092111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 41040022 - 41039892
Alignment:
| Q |
20 |
aggtacaccggcgtatggctgataactcgttgtagttcactgatgaatagcggttataatgtcaatgattggcctatttgtctagctgtcctcatttttt |
119 |
Q |
| |
|
|||||||| || |||||| |||||||||||||||||||||||||||| || |||||| || ||||||| |||| ||||||||| ||| |||||||| |
|
|
| T |
41040022 |
aggtacactggagtatggttgataactcgttgtagttcactgatgaacagtggttatgatctcaatgaatggctcatttgtctacttgtactcattttga |
41039923 |
T |
|
| Q |
120 |
acggtatagttgctcgtattgtggccttcat |
150 |
Q |
| |
|
| || ||| |||| || ||||| |||||||| |
|
|
| T |
41039922 |
atggaataattgcccgaattgtagccttcat |
41039892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University