View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16471_low_40 (Length: 250)
Name: NF16471_low_40
Description: NF16471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16471_low_40 |
 | |
|
| [»] chr8 (14 HSPs) |
| |
|
| [»] scaffold1415 (1 HSPs) |
| |
|
| [»] scaffold0070 (3 HSPs) |
| | |
|
| [»] scaffold0830 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 14)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 25606112 - 25605869
Alignment:
| Q |
7 |
gtgagatgaagagtttgggtgagttgtatctaaacaataacaagctctctggagttttaccaacatgtttgggaaatatgagttctattataaggttata |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25606112 |
gtgaaatgaagagtttgggtgagttgtatctaaacaataaaaagctctctggagttttaccaacatgtttgggaaatatgagttctattataaggttata |
25606013 |
T |
|
| Q |
107 |
cataggatctaacagtctcaactctaagataccttcctctctttggagtgtcatagatatcttacaggtagatttgtcctctaatgcgttcatcggtaat |
206 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25606012 |
cataggatctaacagtctgaactctaagataccttcctctctttggagtgtcatagatatcttacaggtagatttgtcctctaatgcgttcatcggtaat |
25605913 |
T |
|
| Q |
207 |
ctgccacctgagattgggaatttgagagcaattatactattaga |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25605912 |
ctgccacctgagattgggaatttgagagcaattatactattaga |
25605869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 24 - 239
Target Start/End: Complemental strand, 25477119 - 25476904
Alignment:
| Q |
24 |
ggtgagttgtatctaaacaataacaagctctctggagttttaccaacatgtttgggaaatatgagttctattataaggttatacataggatctaacagtc |
123 |
Q |
| |
|
||||||||||||||| | ||||| ||||||||||| |||||||||||||| |||| |||||||| |||| ||| || | || ||||||||||||| |||| |
|
|
| T |
25477119 |
ggtgagttgtatctagaaaataataagctctctggtgttttaccaacatgcttggaaaatatgacttctcttagaatgatagacataggatctaatagtc |
25477020 |
T |
|
| Q |
124 |
tcaactctaagataccttcctctctttggagtgtcatagatatcttacaggtagatttgtcctctaatgcgttcatcggtaatctgccacctgagattgg |
223 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||| ||||| || ||||| |||||||||||||| |
|
|
| T |
25477019 |
tgaactctaagataccttcctctctttggagtgtcatagatatcttagaggtagatttgtcttataatgccttcattgggaatcttccacctgagattgg |
25476920 |
T |
|
| Q |
224 |
gaatttgagagcaatt |
239 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
25476919 |
gaatttgagagcaatt |
25476904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 25454457 - 25454214
Alignment:
| Q |
7 |
gtgagatgaagagtttgggtgagttgtatctaaacaataacaagctctctggagttttaccaacatgtttgggaaatatgagttctattataaggttata |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| || | |
|
|
| T |
25454457 |
gtgaaatgaagagtttgggtgagttgtatctagacaataataagctctctggagttttaccaacatgtttgggaaatatgacttctattataaggataaa |
25454358 |
T |
|
| Q |
107 |
cataggatctaacagtctcaactctaagataccttcctctctttggagtgtcatagatatcttacaggtagatttgtcctctaatgcgttcatcggtaat |
206 |
Q |
| |
|
|||||||||||||| | ||||||| ||||||| |||||||||||| | | |||||| ||| || || |||| || || ||| | || || |||||| |
|
|
| T |
25454357 |
tgtaggatctaacagtttaaactctagaatacctttatctctttggagtcttagagatatattagagataaatttttcttcaaattctttaattggtaat |
25454258 |
T |
|
| Q |
207 |
ctgccacctgagattgggaatttgagagcaattatactattaga |
250 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25454257 |
cttccacctgagattgggaatttgagagcaattatactattaga |
25454214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 25392767 - 25392524
Alignment:
| Q |
7 |
gtgagatgaagagtttgggtgagttgtatctaaacaataacaagctctctggagttttaccaacatgtttgggaaatatgagttctattataaggttata |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||| || | |
|
|
| T |
25392767 |
gtgaaatgaagagtttgggtgagttgtatctaaaaaataataagctctctggagttttaccaacatgtttgggaaatatgatttctcttataaggataaa |
25392668 |
T |
|
| Q |
107 |
cataggatctaacagtctcaactctaagataccttcctctctttggagtgtcatagatatcttacaggtagatttgtcctctaatgcgttcatcggtaat |
206 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| |||||||||||| | | |||| | ||| || || |||| || || ||| | || || |||||| |
|
|
| T |
25392667 |
tgtaggatctaacagtttcaactctagaatacctttatctctttggagtctaagagatttattagagataaatttttcttcaaattctttaattggtaat |
25392568 |
T |
|
| Q |
207 |
ctgccacctgagattgggaatttgagagcaattatactattaga |
250 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25392567 |
cttccacctgagattgggaatttgagagcaattatacgattaga |
25392524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 7 - 234
Target Start/End: Complemental strand, 25312474 - 25312247
Alignment:
| Q |
7 |
gtgagatgaagagtttgggtgagttgtatctaaacaataacaagctctctggagttttaccaacatgtttgggaaatatgagttctattataaggttata |
106 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||| | ||||| ||||| |||||||||||||||||||||||||||||||||| |||| ||| || || || |
|
|
| T |
25312474 |
gtgaaatgaagagtttgggtgaattgtatctagaaaataataagctttctggagttttaccaacatgtttgggaaatatgacttctcttagaaaattgta |
25312375 |
T |
|
| Q |
107 |
cataggatctaacagtctcaactctaagataccttcctctctttggagtgtcatagatatcttacaggtagatttgtcctctaatgcgttcatcggtaat |
206 |
Q |
| |
|
||||||||||||| | | ||||||| |||||||||||||||||||||| |||||||||||||| ||||||||| ||||| ||||| || || ||| || |
|
|
| T |
25312374 |
tataggatctaacaattttaactctatgataccttcctctctttggagtctcatagatatcttaatggtagatttatcctccaatgcatttattggtgat |
25312275 |
T |
|
| Q |
207 |
ctgccacctgagattgggaatttgagag |
234 |
Q |
| |
|
|| |||| ||||||||||||||||||| |
|
|
| T |
25312274 |
cttccactcgagattgggaatttgagag |
25312247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 25324131 - 25323888
Alignment:
| Q |
7 |
gtgagatgaagagtttgggtgagttgtatctaaacaataacaagctctctggagttttaccaacatgtttgggaaatatgagttctattataaggttata |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||| || | |
|
|
| T |
25324131 |
gtgaaatgaagagtttgggtgagttgtatctacaaaataataagctctctggagttttaccaacatgtttgggaaatatgatttctcttataaggataca |
25324032 |
T |
|
| Q |
107 |
cataggatctaacagtctcaactctaagataccttcctctctttggagtgtcatagatatcttacaggtagatttgtcctctaatgcgttcatcggtaat |
206 |
Q |
| |
|
|||||||||||||| | ||||||| ||||||| ||||||||||| | | |||||| ||| || || |||| || || ||| | || || |||| | |
|
|
| T |
25324031 |
tgtaggatctaacagtttgaactctagaatacctttatctctttggaggcttagagatatattagagataaatttttcatcaaattctttaattggtatt |
25323932 |
T |
|
| Q |
207 |
ctgccacctgagattgggaatttgagagcaattatactattaga |
250 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
25323931 |
cttccacctgagattgggaatttgagagcaattgtactattaga |
25323888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 25696835 - 25696592
Alignment:
| Q |
7 |
gtgagatgaagagtttgggtgagttgtatctaaacaataacaagctctctggagttttaccaacatgtttgggaaatatgagttctattataaggttata |
106 |
Q |
| |
|
|||| |||||||||||||||||||||||||| | ||||| ||||| ||||||||||||||||||||||| |||||||||| |||| |||||||| || | |
|
|
| T |
25696835 |
gtgaaatgaagagtttgggtgagttgtatcttgaaaataataagctttctggagttttaccaacatgtttaggaaatatgatttctcttataaggataaa |
25696736 |
T |
|
| Q |
107 |
cataggatctaacagtctcaactctaagataccttcctctctttggagtgtcatagatatcttacaggtagatttgtcctctaatgcgttcatcggtaat |
206 |
Q |
| |
|
|||||||||||||| | ||||||| ||||||| |||||||||||| | | |||||| ||| || || |||| || || ||| | || || |||||| |
|
|
| T |
25696735 |
tgtaggatctaacagtttaaactctagaatacctttatctctttggagtcttagagatatattagagataaatttttcttcaaattctttaattggtaat |
25696636 |
T |
|
| Q |
207 |
ctgccacctgagattgggaatttgagagcaattatactattaga |
250 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25696635 |
cttccacctgagattgggaatttgagagcaattatactattaga |
25696592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 25716668 - 25716425
Alignment:
| Q |
7 |
gtgagatgaagagtttgggtgagttgtatctaaacaataacaagctctctggagttttaccaacatgtttgggaaatatgagttctattataaggttata |
106 |
Q |
| |
|
|||| |||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||| |||| ||| || || | |
|
|
| T |
25716668 |
gtgaaatgaagagtttgggtgagttgtatctggaaaataataagctctctggagttttaccaacatgtttgggaaatatgacttctcttagaatattgaa |
25716569 |
T |
|
| Q |
107 |
cataggatctaacagtctcaactctaagataccttcctctctttggagtgtcatagatatcttacaggtagatttgtcctctaatgcgttcatcggtaat |
206 |
Q |
| |
|
||| |||||||| | | |||||||||||||| ||||||||||||||| ||| ||||||||||| ||| |||||| ||||||||| |||| ||| || |
|
|
| T |
25716568 |
cattggatctaatgatttgaactctaagataccgtcctctctttggagtctcaaagatatcttactagtaaatttgttctctaatgctctcattggtgat |
25716469 |
T |
|
| Q |
207 |
ctgccacctgagattgggaatttgagagcaattatactattaga |
250 |
Q |
| |
|
|| ||||||||| |||||||||||||| |||| || ||||||| |
|
|
| T |
25716468 |
cttccacctgaggttgggaatttgagacaaattgtagtattaga |
25716425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 22899408 - 22899638
Alignment:
| Q |
20 |
tttgggtgagttgtatctaaacaataacaagctctctggagttttaccaacatgtttgggaaatatgagttctattataaggttatacataggatctaac |
119 |
Q |
| |
|
||||| |||||||||| || | | ||| ||||| | ||| ||||||||||||||||||||||| |||| |||| | | || ||||||||||||| |||| |
|
|
| T |
22899408 |
tttggatgagttgtatttagaaagtaataagctttttggtgttttaccaacatgtttgggaaacatgacttctctaagaaaattatacataggatataac |
22899507 |
T |
|
| Q |
120 |
agtctcaactctaagataccttcctctctttggagtgtcatagatatcttacaggtagatttgtcctctaatgcgttcatcggtaatctgccacctgaga |
219 |
Q |
| |
|
| | | ||||||| |||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||| ||||| |||||| | |||| ||||| |
|
|
| T |
22899508 |
aatttgaactctacgataccttcctctctttggagtctcagagatatcttacaagtagatttgtcctctaatgctttcattggtaatattccacttgaga |
22899607 |
T |
|
| Q |
220 |
ttgggaatttgagagcaattatactattaga |
250 |
Q |
| |
|
|||| ||||| | |||||||||||||||||| |
|
|
| T |
22899608 |
ttggaaatttcaaagcaattatactattaga |
22899638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 7 - 242
Target Start/End: Complemental strand, 23259664 - 23259429
Alignment:
| Q |
7 |
gtgagatgaagagtttgggtgagttgtatctaaacaataacaagctctctggagttttaccaacatgtttgggaaatatgagttctattataaggttata |
106 |
Q |
| |
|
|||| |||||||||||||||||||||| |||| ||| ||| ||||| ||||||| ||||||||||||||| |||||||||| |||| ||||||| || | |
|
|
| T |
23259664 |
gtgaaatgaagagtttgggtgagttgtctctagacagtaataagctttctggagctttaccaacatgtttcggaaatatgacttctcttataagagtaca |
23259565 |
T |
|
| Q |
107 |
cataggatctaacagtctcaactctaagataccttcctctctttggagtgtcatagatatcttacaggtagatttgtcctctaatgcgttcatcggtaat |
206 |
Q |
| |
|
|||||||| ||||||| ||||||||| |||||| |||||||||||| | | |||||| ||| | ||| |||| | |||||||| || ||||||||| |
|
|
| T |
23259564 |
cataggatataacagtttcaactctagagtacctttatctctttggagtcttagagatatattagaagtaaattttacttctaatgctttaatcggtaat |
23259465 |
T |
|
| Q |
207 |
ctgccacctgagattgggaatttgagagcaattata |
242 |
Q |
| |
|
|| || || |||||||||||| ||| |||||||||| |
|
|
| T |
23259464 |
cttcctcccgagattgggaatctgaaagcaattata |
23259429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 25652773 - 25652552
Alignment:
| Q |
7 |
gtgagatgaagagtttgggtgagttgtatctaaacaataacaagctctctggagttttaccaacatgtttgggaaatatgagttctattataaggttata |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||| |||||||||||| |||| ||| ||| || | |
|
|
| T |
25652773 |
gtgaaatgaagagtttgggtgagttgtatctacaaaataataagctctctggagttttaccaacatgtatgggaaatatgatttctcttagaagaataaa |
25652674 |
T |
|
| Q |
107 |
cataggatctaacagtctcaactctaagataccttcctctctttggagtgtcatagatatcttacaggtagatttgtcctctaatgcgttcatcggtaat |
206 |
Q |
| |
|
|||||||||||||| | ||||||| ||||||| |||||||||||| | | |||||| ||| || || |||| || || ||| | || || |||||| |
|
|
| T |
25652673 |
tgtaggatctaacagtttaaactctagaatacctttatctctttggagtcttagagatatattagagataaatttttcttcaaattctttaattggtaat |
25652574 |
T |
|
| Q |
207 |
ctgccacctgagattgggaatt |
228 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
25652573 |
cttccacctgagattgggaatt |
25652552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 24874057 - 24874273
Alignment:
| Q |
15 |
aagagtttgggtgagttgtatctaaacaataacaagctctctggagttttaccaacatgtttgggaaatatgagttctattataaggttatacataggat |
114 |
Q |
| |
|
|||||||| ||||||||||||||| | ||||| ||||| ||||| |||||||||||||||||||||||||||| |||| ||| || || || |||||| |
|
|
| T |
24874057 |
aagagtttaggtgagttgtatctagaaaataataagctttctggtgttttaccaacatgtttgggaaatatgacttctcttagaaaattgaacgtaggat |
24874156 |
T |
|
| Q |
115 |
ctaacagtctcaactctaagataccttcctctctttggagtgtcatagatatcttacaggtagatttgtcctctaatgcgttcatcggtaatctgccacc |
214 |
Q |
| |
|
|||||| | | ||||||||||||||||| ||||||||| || ||| ||||| ||| | ||||||||||||| ||||| || || ||| || | ||||| |
|
|
| T |
24874157 |
ctaacaatttgaactctaagataccttcatctctttggggtctcactgatatattaatgttagatttgtcctccaatgcttttattggtgattttccacc |
24874256 |
T |
|
| Q |
215 |
tgagattgggaatttga |
231 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
24874257 |
cgatattgggaatttga |
24874273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 234
Target Start/End: Complemental strand, 25342447 - 25342228
Alignment:
| Q |
15 |
aagagtttgggtgagttgtatctaaacaataacaagctctctggagttttaccaacatgtttgggaaatatgagttctattataaggttatacataggat |
114 |
Q |
| |
|
|||||||| ||||||||||||||| | ||||| ||||| ||||| |||||||||||||||| ||||||||||| |||| ||| || || || |||||| |
|
|
| T |
25342447 |
aagagtttaggtgagttgtatctagaaaataataagctttctggtgttttaccaacatgttcgggaaatatgacttctcttagaaaattgaacgtaggat |
25342348 |
T |
|
| Q |
115 |
ctaacagtctcaactctaagataccttcctctctttggagtgtcatagatatcttacaggtagatttgtcctctaatgcgttcatcggtaatctgccacc |
214 |
Q |
| |
|
|||||| | | ||||||||||||||||| ||||||||| || ||| ||||| ||| | ||||||||||||| ||||| || || ||| || | ||||| |
|
|
| T |
25342347 |
ctaacaatttgaactctaagataccttcatctctttggggtctcactgatatattaatgttagatttgtcctccaatgcttttattggtgattttccacc |
25342248 |
T |
|
| Q |
215 |
tgagattgggaatttgagag |
234 |
Q |
| |
|
|| |||||||||||||||| |
|
|
| T |
25342247 |
cgatattgggaatttgagag |
25342228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 234
Target Start/End: Complemental strand, 25571350 - 25571131
Alignment:
| Q |
15 |
aagagtttgggtgagttgtatctaaacaataacaagctctctggagttttaccaacatgtttgggaaatatgagttctattataaggttatacataggat |
114 |
Q |
| |
|
|||||||| |||||||||||| || | ||||| ||||| ||||| |||||||||||||||| ||||||||||| |||| ||| || || || |||||| |
|
|
| T |
25571350 |
aagagtttaggtgagttgtatatagaaaataataagctttctggtgttttaccaacatgttagggaaatatgacttctcttagaaaattgaacgtaggat |
25571251 |
T |
|
| Q |
115 |
ctaacagtctcaactctaagataccttcctctctttggagtgtcatagatatcttacaggtagatttgtcctctaatgcgttcatcggtaatctgccacc |
214 |
Q |
| |
|
|||||| | | ||||||||||||||| | ||||||||| || ||| ||||| ||| | ||||||||||||| ||||| || || ||| || | ||||| |
|
|
| T |
25571250 |
ctaacaatttgaactctaagatacctacatctctttggggtctcactgatatattaatgttagatttgtcctccaatgcttttattggtgattttccacc |
25571151 |
T |
|
| Q |
215 |
tgagattgggaatttgagag |
234 |
Q |
| |
|
|| |||||||||||||||| |
|
|
| T |
25571150 |
cgatattgggaatttgagag |
25571131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1415 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold1415
Description:
Target: scaffold1415; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 511 - 268
Alignment:
| Q |
7 |
gtgagatgaagagtttgggtgagttgtatctaaacaataacaagctctctggagttttaccaacatgtttgggaaatatgagttctattataaggttata |
106 |
Q |
| |
|
|||| ||||| ||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
511 |
gtgaaatgaaaagtgtgggtgagttgtatctagacaataataagctctctggagttttaccaacatgtttgggaaatatgacttctattataaggttata |
412 |
T |
|
| Q |
107 |
cataggatctaacagtctcaactctaagataccttcctctctttggagtgtcatagatatcttacaggtagatttgtcctctaatgcgttcatcggtaat |
206 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||| |||||| |
|
|
| T |
411 |
cattggatctaacagtctcaactctaagataccttcctctctttggagtgtcatagatatcttagagctagatttgtcctctaatgccttcattggtaat |
312 |
T |
|
| Q |
207 |
ctgccacctgagattgggaatttgagagcaattatactattaga |
250 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
311 |
cttccaactgagattgggaatttgagagcaattatactattaga |
268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 15629 - 15864
Alignment:
| Q |
7 |
gtgagatgaagagtttgggtgagttgtatctaaacaataacaagctctctggagttttaccaacatgtttgggaaatatgagttctattataaggttata |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15629 |
gtgaaatgaagagtttgggtgagttgtatctaaacaataataagctctcgggagttttaccgacatgtttgggaaatatgagttctattataaggttata |
15728 |
T |
|
| Q |
107 |
cataggatctaacagtctcaactctaagataccttcctctctttggagtgtcatagatatcttacaggtagatttgtcctctaatgcgttcatcggtaat |
206 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||| |||||| |
|
|
| T |
15729 |
cattggatctaacagtctgaactctaagataccttcctctctttggagtgtcatagatatcttagagctagatttgtcctctaatgccttcattggtaat |
15828 |
T |
|
| Q |
207 |
ctgccacctgagattgggaatttgagagcaattata |
242 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||| |
|
|
| T |
15829 |
cttccgcctgagattgggaatttgagagcaattata |
15864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 49151 - 49394
Alignment:
| Q |
7 |
gtgagatgaagagtttgggtgagttgtatctaaacaataacaagctctctggagttttaccaacatgtttgggaaatatgagttctattataaggttata |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| | ||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49151 |
gtgaaatgaagagtttgggtgagttgtatctagaaaataataagctctctggtggtttaccaacatgtttgggaaatatgagttctattataaggttata |
49250 |
T |
|
| Q |
107 |
cataggatctaacagtctcaactctaagataccttcctctctttggagtgtcatagatatcttacaggtagatttgtcctctaatgcgttcatcggtaat |
206 |
Q |
| |
|
||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||| |||||| |
|
|
| T |
49251 |
cattggatctaacagtctgaactctaagatgccttcctctctttggagtgtcatagatatcttagagatagatttgtcctctaatgccttcattggtaat |
49350 |
T |
|
| Q |
207 |
ctgccacctgagattgggaatttgagagcaattatactattaga |
250 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
49351 |
cttccacctgagattggcaatttgagagcaattatactattaga |
49394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 234
Target Start/End: Original strand, 35677 - 35896
Alignment:
| Q |
15 |
aagagtttgggtgagttgtatctaaacaataacaagctctctggagttttaccaacatgtttgggaaatatgagttctattataaggttatacataggat |
114 |
Q |
| |
|
|||||||| |||||||||||| || | ||||| ||||| ||||| |||||||||||||||||||||||||||| |||| ||| || || || |||||| |
|
|
| T |
35677 |
aagagtttaggtgagttgtatatagaaaataataagctttctggtgttttaccaacatgtttgggaaatatgacttctcttagaaaattgaacgtaggat |
35776 |
T |
|
| Q |
115 |
ctaacagtctcaactctaagataccttcctctctttggagtgtcatagatatcttacaggtagatttgtcctctaatgcgttcatcggtaatctgccacc |
214 |
Q |
| |
|
|||||| | | ||||||||||||||||| ||||||||| || ||| ||||| ||| | ||||||||||||| ||||| || || ||| || | ||||| |
|
|
| T |
35777 |
ctaacaatttgaactctaagataccttcatctctttggggtctcactgatatattaatgttagatttgtcctccaatgcttttattggtgattttccacc |
35876 |
T |
|
| Q |
215 |
tgagattgggaatttgagag |
234 |
Q |
| |
|
|| |||||||||||||||| |
|
|
| T |
35877 |
cgatattgggaatttgagag |
35896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 7 - 242
Target Start/End: Complemental strand, 10325319 - 10325084
Alignment:
| Q |
7 |
gtgagatgaagagtttgggtgagttgtatctaaacaataacaagctctctggagttttaccaacatgtttgggaaatatgagttctattataaggttata |
106 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| | || || ||||||||||||||||||||||||||| |||||||||||| |||| |||||||| || | |
|
|
| T |
10325319 |
gtgaaatgaagagtttgggtgacttgtatcttgaaaagaataagctctctggagttttaccaacatgtatgggaaatatgacttctcttataaggataca |
10325220 |
T |
|
| Q |
107 |
cataggatctaacagtctcaactctaagataccttcctctctttggagtgtcatagatatcttacaggtagatttgtcctctaatgcgttcatcggtaat |
206 |
Q |
| |
|
||||||| |||| | | |||||||| ||||||| |||||||||||| | | ||||| ||| || || |||| || || ||| | || | |||||| |
|
|
| T |
10325219 |
tgtaggatccaacaatttgaactctaaaatacctttatctctttggagtcttagggatatattagagataaatttttcttcaaattctttaagtggtaat |
10325120 |
T |
|
| Q |
207 |
ctgccacctgagattgggaatttgagagcaattata |
242 |
Q |
| |
|
|| |||||| |||||| ||||||||||||||||||| |
|
|
| T |
10325119 |
cttccacctcagattgagaatttgagagcaattata |
10325084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0830 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0830
Description:
Target: scaffold0830; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 3127 - 3361
Alignment:
| Q |
16 |
agagtttgggtgagttgtatctaaacaataacaagctctctggagttttaccaacatgtttgggaaatatgagttctattataaggttatacataggatc |
115 |
Q |
| |
|
|||| ||| ||||||| |||||| | ||||| ||||| ||||| ||||| || |||||||||||||||||| || | ||| || || |||||||||| |
|
|
| T |
3127 |
agaggttgagtgagttatatctacaaaataataagctatctggtgttttgtcaccatgtttgggaaatatgacttttcttagaaatttggacataggatc |
3226 |
T |
|
| Q |
116 |
taacagtctcaactctaagataccttcctctctttggagtgtcatagatatcttacaggtagatttgtcctctaatgcgttcatcggtaatctgccacct |
215 |
Q |
| |
|
||||| | | ||||||| ||| ||||| |||||||||||| | | | |||||||| || || ||||||||||||||| |||| |||||||| |||||| |
|
|
| T |
3227 |
taacaattttaactctaggattccttcgtctctttggagtcttacatatatcttaaagttaaatttgtcctctaatggtttcagtggtaatcttccacct |
3326 |
T |
|
| Q |
216 |
gagattgggaatttgagagcaattatactattaga |
250 |
Q |
| |
|
||||||| |||||||||||||||| | ||||||| |
|
|
| T |
3327 |
gagattgcaaatttgagagcaattacattattaga |
3361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 48 - 244
Target Start/End: Original strand, 5118358 - 5118554
Alignment:
| Q |
48 |
aagctctctggagttttaccaacatgtttgggaaatatgagttctattataaggttatacataggatctaacagtctcaactctaagataccttcctctc |
147 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||| |||| ||| || ||| ||||||||||||| || | | |||| |||||||||||| |
|
|
| T |
5118358 |
aagctttctggagtgttaccaacatgtttgggaaatatgacttctcttagaaagtttcacataggatctaataggttaacctctgcgataccttcctcat |
5118457 |
T |
|
| Q |
148 |
tttggagtgtcatagatatcttacaggtagatttgtcctctaatgcgttcatcggtaatctgccacctgagattgggaatttgagagcaattatact |
244 |
Q |
| |
|
|||||| | || |||||| ||| ||||| | | ||||| ||||| || || || || || |||||||||||| |||||||||||| ||||||| |
|
|
| T |
5118458 |
tttggaatctcggagatattttagaggtaaacgtatcctccaatgctttaattggaaaacttccacctgagattaagaatttgagagctgttatact |
5118554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 234
Target Start/End: Original strand, 5100807 - 5100985
Alignment:
| Q |
56 |
tggagttttaccaacatgtttgggaaatatgagttctattataaggttatacataggatctaacagtctcaactctaagataccttcctctctttggagt |
155 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||| ||| || ||| ||||||||||||| || | | |||| |||||||||| || |||||| | |
|
|
| T |
5100807 |
tggagtgttaccaacatgtttgggaaatatgacttctcttagaaagtttcacataggatctaataggttaacctctgagataccttcttccttttggaat |
5100906 |
T |
|
| Q |
156 |
gtcatagatatcttacaggtagatttgtcctctaatgcgttcatcggtaatctgccacctgagattgggaatttgagag |
234 |
Q |
| |
|
|| |||||| ||| ||||||| | || |||||||| || || | ||||| |||||||||||| ||||||||||| |
|
|
| T |
5100907 |
ctcgaagatattttagaggtagacctatcttctaatgctttaattgcaaatcttccacctgagattaagaatttgagag |
5100985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 250
Target Start/End: Complemental strand, 5081178 - 5080985
Alignment:
| Q |
57 |
ggagttttaccaacatgtttgggaaatatgagttctattataaggttatacataggatctaacagtctcaactctaagataccttcctctctttggagtg |
156 |
Q |
| |
|
||||| ||||| ||||||||||||||||||| |||| ||| || ||| |||||||||||||| || | |||| ||||||||||||| |||||| | |
|
|
| T |
5081178 |
ggagtgttaccgacatgtttgggaaatatgacttctcttagaaagttttacataggatctaataggttagcctctgagataccttcctcattttggaatc |
5081079 |
T |
|
| Q |
157 |
tcatagatatcttacaggtagatttgtcctctaatgcgttcatcggtaatctgccacctgagattgggaatttgagagcaattatactattaga |
250 |
Q |
| |
|
||| ||||||||| ||||| | |||||||| ||||| || | || | | | |||||||||||| |||||| ||||| ||||||| ||||| |
|
|
| T |
5081078 |
tcaatgatatcttagaggtaaacttgtcctccaatgctttaactggaattattccacctgagattaagaattttagagctcttatactgttaga |
5080985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 244
Target Start/End: Complemental strand, 14413525 - 14413296
Alignment:
| Q |
15 |
aagagtttgggtgagttgtatctaaacaataacaagctctctggagttttaccaacatgtttgggaaatatgagttctattataaggttatacataggat |
114 |
Q |
| |
|
||||||||| ||||||| ||| ||| | || ||||| | |||||| ||||||||||||||||||||||||| ||| ||| || | | ||| |||||| |
|
|
| T |
14413525 |
aagagtttgagtgagttatatttaataagcaataagctttttggagtgttaccaacatgtttgggaaatatgacttcacttagaaagctttacttaggat |
14413426 |
T |
|
| Q |
115 |
ctaacagtctcaactctaagataccttcctctctttggagtgtcatagatatcttacaggtagatttgtcctctaatgcgttcatcggtaatctgccacc |
214 |
Q |
| |
|
||||||| | | ||||| ||||||||||| |||||| | | |||||| ||| ||||| | | ||||| ||||| || || || ||||| ||||| |
|
|
| T |
14413425 |
ctaacaggttaacctctagtataccttcctccttttggaatcttgaagatattttagaggtaaacctatcctccaatgctttaattggaaatcttccacc |
14413326 |
T |
|
| Q |
215 |
tgagattgggaatttgagagcaattatact |
244 |
Q |
| |
|
||||||| |||||||||||| ||||||| |
|
|
| T |
14413325 |
tgagattaagaatttgagagctgttatact |
14413296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 16885080 - 16885141
Alignment:
| Q |
57 |
ggagttttaccaacatgtttgggaaatatgagttctattataaggttatacataggatctaa |
118 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||| ||| || ||| |||||||||||||| |
|
|
| T |
16885080 |
ggagtgttaccaacatgcttgggaaatatgagttctcttagaaagttgtacataggatctaa |
16885141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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