View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16471_low_42 (Length: 226)
Name: NF16471_low_42
Description: NF16471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16471_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 17194963 - 17194788
Alignment:
| Q |
16 |
aagaagaaagagtagcaacaacgttgttgttgtgagaagccatagccatgaaaacaattgaagaagaaaaggaaagtt-gtgtttagggtttaagagaga |
114 |
Q |
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| T |
17194963 |
aagaagaaagagtagcaacaacgttgttgttgtgagaagccatagccatgaaatcaaatgaagaagaaaaggaaagttagtgtttagggtttaagagaga |
17194864 |
T |
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| Q |
115 |
aaagagaagcaatgcgtgtttagggtttcctttcaattaagggtactgtgagttgaatcaattctcacttatatata |
191 |
Q |
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| T |
17194863 |
aaagagaagcaatgcgtg-ttagggcttcctttcaattaagtgtactgtgagttgaatcaattctcacttatatata |
17194788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 17185483 - 17185658
Alignment:
| Q |
16 |
aagaagaaagagtagcaacaacgttgttgttgtgagaagccatagccatgaaaacaattgaagaagaaaaggaaagtt-gtgtttagggtttaagagaga |
114 |
Q |
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| T |
17185483 |
aagaagaaagagtagcaacaacgttgttgttgtgagaagccatagccatgaaatcaaatgaagaagaaaaggaaagttagtgtttagggtttaagagaga |
17185582 |
T |
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| Q |
115 |
aaagagaagcaatgcgtgtttagggtttcctttcaattaagggtactgtgagttgaatcaattctcacttatatata |
191 |
Q |
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| T |
17185583 |
aaaaagaagcaatgcgtg-ttagggcttcctttcaattaagtgtactgtgagttgaatcaattctcacttatatata |
17185658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 48 - 191
Target Start/End: Original strand, 17175589 - 17175740
Alignment:
| Q |
48 |
tgagaagccatagccatgaaaacaattgaagaagaaaaggaaagtt-gtgtttagggtttaaga-------gagaaaagagaagcaatgcgtgtttaggg |
139 |
Q |
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| T |
17175589 |
tgagcagccatagccatgaaatcaattgaagaagaaaaggaaagttagcgtttagggtttaagaaagaagagagaagagagaagctatgcgtgtttaggg |
17175688 |
T |
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| Q |
140 |
tttcctttcaattaagggtactgtgagttgaatcaattctcacttatatata |
191 |
Q |
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| T |
17175689 |
tttcctttcaattaagtgtactgtgagttgaatcaattctcacttatatata |
17175740 |
T |
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