View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16471_low_45 (Length: 222)
Name: NF16471_low_45
Description: NF16471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16471_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 37154698 - 37154505
Alignment:
| Q |
10 |
agtagcaaaggaaccggcaaacatatcaacgccgcaatcttgaaaaccagtccaaacctctttgttctgttgtcaaaggccaacaattgatgagtgagat |
109 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37154698 |
agtaacaaaggaaccggcaaacatatcaacgccgcaatcttgaaaaccagtccaaacctctttgttctgttttcaaaggccaacaattgatgagtgagat |
37154599 |
T |
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| Q |
110 |
tgagttagaacatatgaaacgtataatcatacatagtttgcaattgcaagtccaaagaatttggaaagaaagtacaaccttgctacacaatagt |
203 |
Q |
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| T |
37154598 |
tgagttagaacatatgaaacatataatcatacatagtttgcaattgcaagtccaaagaatttggaaagaaagtacaaccttgctacacaatagt |
37154505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 37200053 - 37199860
Alignment:
| Q |
10 |
agtagcaaaggaaccggcaaacatatcaacgccgcaatcttgaaaaccagtccaaacctctttgttctgttgtcaaaggccaacaattgatgagtgagat |
109 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37200053 |
agtaacaaaggaaccggcaaacatatcaacgccgcaatcttgaaaaccagtccaaacctctttgttctgttttcaaaggccaacaattgatgagtgagat |
37199954 |
T |
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| Q |
110 |
tgagttagaacatatgaaacgtataatcatacatagtttgcaattgcaagtccaaagaatttggaaagaaagtacaaccttgctacacaatagt |
203 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37199953 |
tgagttagaacatatgaaacatataatcatacatagtttgcaattgcaagtccaaagaatttggaaagaaagtacaaccttgctacacaatagt |
37199860 |
T |
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