View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16471_low_8 (Length: 659)
Name: NF16471_low_8
Description: NF16471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16471_low_8 |
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| [»] scaffold0592 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 15 - 475
Target Start/End: Original strand, 15381673 - 15382133
Alignment:
| Q |
15 |
aatatagaaggtactatcaattatcattgaccatgactcttcaaataaccagttcatgctcgtgaccatctccaggctgttctatgctatccttatacta |
114 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
15381673 |
aataaagaaggtactatcaattatcattgactatgactcttcaaataaccagttcctgctcgtgaccatctccaggctgttctattatatccttatacta |
15381772 |
T |
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| Q |
115 |
catcacttgccccctgaaatttccgacagtctctgctttgcattcatctattcattcattcagacatagatcttcatatgaggaacatttattttcatat |
214 |
Q |
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| T |
15381773 |
catcacttgccccctgaaatttccgacagtctctgctttgcattcatctattcattcattcagacatagatcttcatatgtggaacatttattttcatgt |
15381872 |
T |
|
| Q |
215 |
tttgaccacccaaacatttcaacttttacatcagagacacatcttgtcaaataaatgtttcataatgaaatggaagatgggtagcaaccactacctatgc |
314 |
Q |
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| T |
15381873 |
tttgaccacccaaacatttcaacttttacatcagagatacatcttgtcaaataaatgttccataatgaattggaagaagggtagcaactactacctatgc |
15381972 |
T |
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| Q |
315 |
agctgaacatgcctttattacatttcaagattatattaaaatttgcatatttgaagcagaagagcataannnnnnnnnaaaaagcaacagatcttaaaaa |
414 |
Q |
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| T |
15381973 |
agctgaacatgcctttattacatttcaagattatattaaaatttgcatatttgaagcagaagagtataatttttttttaaaaagcaacagatcttaaaaa |
15382072 |
T |
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| Q |
415 |
aggtactttagtacagaatttattctctacaaaagcttaattaaaggttagacttatagag |
475 |
Q |
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| T |
15382073 |
aggtactttggtacagaatttattctctacaaaagcttaattaaaggttagacttatagag |
15382133 |
T |
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Back To:
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Target: scaffold0592 (Bit Score: 93; Significance: 6e-45; HSPs: 1)
Name: scaffold0592
Description:
Target: scaffold0592; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 523 - 639
Target Start/End: Complemental strand, 2614 - 2498
Alignment:
| Q |
523 |
cctccctagctctggtagggtttcctaacatctaagtggcggccggtcccaatctctgttggctttcccccagaatctcctggctcttttcattcctcaa |
622 |
Q |
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|||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2614 |
cctcccgagctcttttagggtttcctaacatctaattggcggccggtcccaatctctgttggctttcccccagaatctcctggctcttttcattcctcaa |
2515 |
T |
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| Q |
623 |
gggtctccgttcctagg |
639 |
Q |
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| T |
2514 |
tggtctctgttcctagg |
2498 |
T |
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