View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16472_low_4 (Length: 254)
Name: NF16472_low_4
Description: NF16472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16472_low_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 46747333 - 46747570
Alignment:
| Q |
1 |
caaggatgaaaacaatgtggctagtggtgattctatcttagaatgtgcttcaattgcagaatcatgtccgcaagttgtcgcagttggagttaactgtacc |
100 |
Q |
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| T |
46747333 |
caaggatgaaaacaatgtggctagtggtgattctatcttagaatgtgcttccattgctgattcatgtccacaagttgtcgcagttggagttaactgtaca |
46747432 |
T |
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| Q |
101 |
gctcctagattcatccatggtttgatttcatctattaaaaaggtgtgacttttatacaagtttatgctctttacactatcaaattaaatgtgctaatttg |
200 |
Q |
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| T |
46747433 |
gctcctagatttattcatggtttgatttcatctattaaaaaggtgtgacttttatataagtttatgctctt----------------atgtgctaatttg |
46747516 |
T |
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| Q |
201 |
ttttactattttgattggcttttgtaaatcattcttatacaagttttagttaat |
254 |
Q |
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| T |
46747517 |
ttttactattttgattggcttttgtaaatcattcttatacaagttttagttaat |
46747570 |
T |
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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 105 - 178
Target Start/End: Complemental strand, 52614820 - 52614747
Alignment:
| Q |
105 |
ctagattcatccatggtttgatttcatctattaaaaaggtgtgacttttatacaagtttatgctctttacacta |
178 |
Q |
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| T |
52614820 |
ctagatttattcatggtttgatttcatctattaaaaaggtgtgacttttatataaggttatcttctttacacta |
52614747 |
T |
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