View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16472_low_5 (Length: 252)
Name: NF16472_low_5
Description: NF16472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16472_low_5 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 30947171 - 30946932
Alignment:
| Q |
13 |
cagagagaacgaacgaaagtgaaagcgtggaaaattaaaagaataagaactaccggcactttgatatgtttcttacataacttcaaacttggaatttcat |
112 |
Q |
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| T |
30947171 |
cagagagaacgaacgaaagtgaaagcgtggaaaatcaaaagaataagaactaccggcactttgatatgtttcttacataacttcaaacttggaatttcat |
30947072 |
T |
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| Q |
113 |
gtaacagcttttcttcatcgccaacatgacctgaaagaaagaacgattgtcggaaccacatagagatttttcacgtaaatttagagagatattggaacaa |
212 |
Q |
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| T |
30947071 |
gtaacagcttttcttcatcgccaacatgacctgaaagaaagaacgattgtcggaaccacatagagatttttcacgtaaatttagagagatattggaacaa |
30946972 |
T |
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| Q |
213 |
tgattgagacgtgaaacaatgctgtcacggtagacatggg |
252 |
Q |
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| T |
30946971 |
tgattgagacgtgaaacaatgatgtcacggtagacatggg |
30946932 |
T |
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