View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16472_low_6 (Length: 222)

Name: NF16472_low_6
Description: NF16472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16472_low_6
NF16472_low_6
[»] chr7 (4 HSPs)
chr7 (1-205)||(36021235-36021439)
chr7 (73-182)||(40491663-40491772)
chr7 (80-185)||(37148557-37148662)
chr7 (117-185)||(43843000-43843068)
[»] chr1 (3 HSPs)
chr1 (128-182)||(213172-213226)
chr1 (136-185)||(25061343-25061392)
chr1 (136-168)||(52201980-52202012)
[»] chr6 (1 HSPs)
chr6 (120-180)||(1500032-1500092)
[»] chr3 (3 HSPs)
chr3 (73-188)||(49526625-49526741)
chr3 (79-162)||(53567967-53568050)
chr3 (140-185)||(41459297-41459342)
[»] chr4 (4 HSPs)
chr4 (97-160)||(26469573-26469636)
chr4 (136-182)||(17897799-17897845)
chr4 (64-169)||(2173926-2174031)
chr4 (105-185)||(5025575-5025655)
[»] scaffold0172 (1 HSPs)
scaffold0172 (79-185)||(15217-15323)
[»] chr5 (2 HSPs)
chr5 (138-184)||(9952538-9952584)
chr5 (136-185)||(34250256-34250305)
[»] chr2 (5 HSPs)
chr2 (79-185)||(12110918-12111024)
chr2 (135-185)||(26611436-26611486)
chr2 (79-185)||(37531750-37531856)
chr2 (126-167)||(44810817-44810858)
chr2 (98-182)||(11759750-11759834)
[»] chr8 (1 HSPs)
chr8 (104-185)||(41408258-41408339)


Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 36021439 - 36021235
Alignment:
Q  1 ttttttgacaaataaagccacaaaaaagcaattctgatccaaaacataaactgataaaaattaacttttttaatgaatgtatccaaacataactcgtttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36021439 ttttttgacaaataaagccacaaaaaagcaattctgatccaaaacataaactgataaaaattaatttttttaatgaatgtatccaaacataactcgtttt 36021340  T
Q  101 accttcaattcacttccaaccaaagtcaattttgtaaaatcaatttagtcaaaatcaatttttgtcaccctagaaccaaacacaccctcggtaaaggtac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36021339 accttcaattcacttccaaccaaagtcaattttgtaaaatcaatttagtcaaaatcaatttttgtcaccctagaaccaaacacaccctcggtaaaggtac 36021240  T
Q  201 atcag 205  Q
    |||||    
T  36021239 atcag 36021235  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 40491663 - 40491772
Alignment:
Q  73 atgaatgtatccaaacataactcgttttaccttcaattcacttccaaccaaagtcaattttgtaaaatcaatttagtcaaaatcaatttttgtcacccta 172  Q
    ||||||||||||||| |||| ||  ||||||||||| ||||||  |  |||| ||||||||  | |||||||| | |||||||||||| ||||||||  |    
T  40491663 atgaatgtatccaaaaataaatcactttaccttcaactcacttttagtcaaaatcaattttacagaatcaattcactcaaaatcaattcttgtcaccgca 40491762  T
Q  173 gaaccaaaca 182  Q
    ||||||||||    
T  40491763 gaaccaaaca 40491772  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 185
Target Start/End: Complemental strand, 37148662 - 37148557
Alignment:
Q  80 tatccaaacataactcgttttaccttcaattcacttccaaccaaagtcaattttgtaaaatcaatttagtcaaaatcaatttttgtcaccctagaaccaa 179  Q
    |||||||||| || || |||| | ||||| ||| ||  || |||| |||||||| || ||| ||||||  |||||||||||||| ||||| || ||||||    
T  37148662 tatccaaacagaaatcatttttcattcaactcatttttaatcaaaatcaattttatagaattaatttaaccaaaatcaatttttttcaccatataaccaa 37148563  T
Q  180 acacac 185  Q
    ||||||    
T  37148562 acacac 37148557  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 43843068 - 43843000
Alignment:
Q  117 caaccaaagtcaattttgtaaaatcaatttagtcaaaatcaatttttgtcaccctagaaccaaacacac 185  Q
    |||||||| | |||||| || ||||| || |||||||||||| ||||||||||  | ||||||||||||    
T  43843068 caaccaaaatgaattttatataatcagttcagtcaaaatcaaattttgtcaccgcataaccaaacacac 43843000  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 213226 - 213172
Alignment:
Q  128 aattttgtaaaatcaatttagtcaaaatcaatttttgtcaccctagaaccaaaca 182  Q
    |||||| || |||||||||| |||||||||||||||||||||  |||||||||||    
T  213226 aattttatagaatcaatttaatcaaaatcaatttttgtcaccgcagaaccaaaca 213172  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 25061343 - 25061392
Alignment:
Q  136 aaaatcaatttagtcaaaatcaatttttgtcaccctagaaccaaacacac 185  Q
    |||||||||||   ||||||||||||||||||||  ||||||||||||||    
T  25061343 aaaatcaattttaacaaaatcaatttttgtcaccgcagaaccaaacacac 25061392  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 52202012 - 52201980
Alignment:
Q  136 aaaatcaatttagtcaaaatcaatttttgtcac 168  Q
    |||||||||||| ||||||||||||||||||||    
T  52202012 aaaatcaatttattcaaaatcaatttttgtcac 52201980  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 1500032 - 1500092
Alignment:
Q  120 ccaaagtcaattttgtaaaatcaatttagtcaaaatcaatttttgtcaccctagaaccaaa 180  Q
    ||||| ||||||||  |||||||||| ||||||||||||||||||||| |  |||||||||    
T  1500032 ccaaaatcaattttacaaaatcaattcagtcaaaatcaatttttgtcaactcagaaccaaa 1500092  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 188
Target Start/End: Complemental strand, 49526741 - 49526625
Alignment:
Q  73 atgaatgtatccaaacataactcgttttaccttcaattcacttccaaccaaagtcaattttgt-aaaatcaatttagtcaaaatcaatttttgtcaccct 171  Q
    |||||||||||||||||||| ||  |||||  |||||||||||  || |||| |||||| | | |||||||||||  ||||| |||||| |||  |||      
T  49526741 atgaatgtatccaaacataaatcaatttacaatcaattcacttttaatcaaaatcaattctatcaaaatcaatttcatcaaactcaattcttgctaccgc 49526642  T
Q  172 agaaccaaacacaccct 188  Q
    |||||||||||||||||    
T  49526641 agaaccaaacacaccct 49526625  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 162
Target Start/End: Original strand, 53567967 - 53568050
Alignment:
Q  79 gtatccaaacataactcgttttaccttcaattcacttccaaccaaagtcaattttgtaaaatcaatttagtcaaaatcaatttt 162  Q
    |||||||||||||| |   ||| | ||||| ||||||  || |||| |||||||||||||||||||| | ||||||||||||||    
T  53567967 gtatccaaacataaattacttttcattcaactcacttttaatcaaaatcaattttgtaaaatcaattcactcaaaatcaatttt 53568050  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 41459297 - 41459342
Alignment:
Q  140 tcaatttagtcaaaatcaatttttgtcaccctagaaccaaacacac 185  Q
    |||||| | |||||||||||||| |||||| |||||||||||||||    
T  41459297 tcaattcaatcaaaatcaattttcgtcaccatagaaccaaacacac 41459342  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 160
Target Start/End: Original strand, 26469573 - 26469636
Alignment:
Q  97 ttttaccttcaattcacttccaaccaaagtcaattttgtaaaatcaatttagtcaaaatcaatt 160  Q
    |||||| ||||||  ||||  ||||||| |||||| ||||||||||||||| ||||||||||||    
T  26469573 ttttacattcaatcaactttaaaccaaaatcaattatgtaaaatcaatttaatcaaaatcaatt 26469636  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 17897845 - 17897799
Alignment:
Q  136 aaaatcaatttagtcaaaatcaatttttgtcaccctagaaccaaaca 182  Q
    |||||||||| | |||||||||||||||||||||  |||||||||||    
T  17897845 aaaatcaattcactcaaaatcaatttttgtcaccgcagaaccaaaca 17897799  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 169
Target Start/End: Original strand, 2173926 - 2174031
Alignment:
Q  64 acttttttaatgaatgtatccaaacataactcgttttaccttcaattcacttccaaccaaagtcaattttgtaaaatcaatttagtcaaaatcaattttt 163  Q
    |||||||| || |||||||||||||||||     ||||||||||||  |||| |||||||| ||||  |  |||| | ||||||| |||||||||||||     
T  2173926 acttttttcataaatgtatccaaacataaaatactttaccttcaataaactttcaaccaaaatcaaactactaaatttaatttagacaaaatcaatttta 2174025  T
Q  164 gtcacc 169  Q
    ||||||    
T  2174026 gtcacc 2174031  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 185
Target Start/End: Original strand, 5025575 - 5025655
Alignment:
Q  105 tcaattcacttccaaccaaagtcaattttgtaaaatcaatttagtcaaaatcaatttttgtcaccctagaaccaaacacac 185  Q
    |||| ||||||| ||| ||| |||||| |  |||||||||| | |||||||||||||| ||||||  | ||||||||||||    
T  5025575 tcaactcacttctaactaaaatcaattctacaaaatcaattcaatcaaaatcaattttagtcaccgcataaccaaacacac 5025655  T

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Target: scaffold0172 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 185
Target Start/End: Complemental strand, 15323 - 15217
Alignment:
Q  79 gtatccaaacataactcgttttaccttcaattcacttccaaccaaagtcaattttgtaaaatcaatttagtcaaaatcaatttttgtcaccctagaacca 178  Q
    |||||||||||||| ||  ||||  ||||| ||||||  ||||||| |||||||   ||||||||||   |||||||||||||| ||||||  | |||||    
T  15323 gtatccaaacataaatcactttatattcaactcacttttaaccaaaatcaatttgacaaaatcaattctatcaaaatcaattttcgtcaccgcacaacca 15224  T
Q  179 aacacac 185  Q
    |||||||    
T  15223 aacacac 15217  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 9952584 - 9952538
Alignment:
Q  138 aatcaatttagtcaaaatcaatttttgtcaccctagaaccaaacaca 184  Q
    |||||||| | |||||||||||||||||||||| |||| ||||||||    
T  9952584 aatcaattcattcaaaatcaatttttgtcacccaagaatcaaacaca 9952538  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 34250305 - 34250256
Alignment:
Q  136 aaaatcaatttagtcaaaatcaatttttgtcaccctagaaccaaacacac 185  Q
    |||||||||| | ||||||||||||||| ||||| |||||| ||||||||    
T  34250305 aaaatcaattcactcaaaatcaatttttctcaccgtagaactaaacacac 34250256  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 185
Target Start/End: Original strand, 12110918 - 12111024
Alignment:
Q  79 gtatccaaacataactcgttttaccttcaattcacttccaaccaaagtcaattttgtaaaatcaatttagtcaaaatcaatttttgtcaccctagaacca 178  Q
    |||||||||||||| ||  ||||  ||||| ||||||  ||||||| |||||||   ||||||||||   |||||||||||||| ||||||  | |||||    
T  12110918 gtatccaaacataaatcactttatattcaactcacttttaaccaaaatcaatttgacaaaatcaattctatcaaaatcaattttcgtcaccgcacaacca 12111017  T
Q  179 aacacac 185  Q
    |||||||    
T  12111018 aacacac 12111024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 26611486 - 26611436
Alignment:
Q  135 taaaatcaatttagtcaaaatcaatttttgtcaccctagaaccaaacacac 185  Q
    ||||||||||| ||||| ||||||||| ||||||  |||||||||||||||    
T  26611486 taaaatcaattcagtcataatcaatttatgtcacggtagaaccaaacacac 26611436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 185
Target Start/End: Complemental strand, 37531856 - 37531750
Alignment:
Q  79 gtatccaaacataactcgttttaccttcaattcacttccaaccaaagtcaattttgtaaaatcaatttagtcaaaatcaatttttgtcaccctagaacca 178  Q
    ||||||||||| || || |||| | ||||| ||||||  ||  ||| |||||||| || ||||||||||   ||||||||||||| ||||| || |||||    
T  37531856 gtatccaaacagaaatcatttttcattcaactcactttgaatgaaaatcaattttatagaatcaatttaacaaaaatcaatttttttcaccgtataacca 37531757  T
Q  179 aacacac 185  Q
    |||||||    
T  37531756 aacacac 37531750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 167
Target Start/End: Original strand, 44810817 - 44810858
Alignment:
Q  126 tcaattttgtaaaatcaatttagtcaaaatcaatttttgtca 167  Q
    |||||||||||||||||||| | ||||||| |||||||||||    
T  44810817 tcaattttgtaaaatcaattcattcaaaataaatttttgtca 44810858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 182
Target Start/End: Complemental strand, 11759834 - 11759750
Alignment:
Q  98 tttaccttcaattcacttccaaccaaagtcaattttgtaaaatcaatttagtcaaaatcaatttttgtcaccctagaaccaaaca 182  Q
    ||||||||||| ||||||  || |||| ||||||||  |||||||||| | ||||| ||||||||| |||||  | |||||||||    
T  11759834 tttaccttcaactcacttttaatcaaaatcaattttacaaaatcaattcactcaaactcaatttttttcacctcataaccaaaca 11759750  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 104 - 185
Target Start/End: Original strand, 41408258 - 41408339
Alignment:
Q  104 ttcaattcacttccaaccaaagtcaattttgtaaaatcaatttagtcaaaatcaatttttgtcaccctagaaccaaacacac 185  Q
    ||||||||||||| ||| ||| |||||| |  ||||| |||| | ||||||||||||||  ||||| || ||||||||||||    
T  41408258 ttcaattcacttctaactaaaatcaattctacaaaattaattcaatcaaaatcaattttaatcaccgtataaccaaacacac 41408339  T

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