View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16473_high_4 (Length: 400)
Name: NF16473_high_4
Description: NF16473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16473_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 31525814 - 31525421
Alignment:
| Q |
1 |
ttaatccacaagagtctcatagtgtgaaagagatttctaccagaggtcaacttacaaaagaggaagaaaaagaggttggtgatgttggctggaagccatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
31525814 |
ttaatccacaagagtctcatagtgtgaaagagatttctaccagaggtcaacttacaaaagaggaagaaaaagagattggtgatgttggctggaagccatt |
31525715 |
T |
|
| Q |
101 |
ctgggattatatatcttattccaagggatcattgatgctgtgttttattgtgttagcacaatctgcttttatggctttgcagactgcatcatccttttgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31525714 |
ctgggattatatatcttattccaagggatcattgatgctgtgttttattgtgttagcacaatctgcttttatggctttgcagactgcatcatccttttgg |
31525615 |
T |
|
| Q |
201 |
cttgctattgcgatcgaaattccaaaagtaacgagtgccaacttgattggagtttattcattaatttctttcactggtgttatgtttgtatatataaggt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31525614 |
cttgctattgcgatcgaaattccaaaagtaacgagtgccaacttgattggagtttattcattaatttctttcactggtgttatgtttgtatatataaggt |
31525515 |
T |
|
| Q |
301 |
cttacttgatggcgcgtctcggattaaatgcttctattgcctacttctctagcttcactacagctatcttcaattctccaatgatattcttcga |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
31525514 |
cttacttgatggcgcgtctcggattaaatgcttctattgcctacttctctagcttcactacagctatcttcaattctccaatgatgttcttcga |
31525421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 6e-84; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 48 - 381
Target Start/End: Original strand, 5314629 - 5314962
Alignment:
| Q |
48 |
caacttacaaaagaggaagaaaaagaggttggtgatgttggctggaagccattctgggattatatatcttattccaagggatcattgatgctgtgtttta |
147 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||||||||||| ||||||||||||||||||||||| |||| ||||| ||||||||| ||| ||||||||| |
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|
| T |
5314629 |
caacttacaaaagaagaagaaaaagtgattggtgatgttggttggaagccattctgggattatatttctttttccaggggatcattcatgttgtgtttta |
5314728 |
T |
|
| Q |
148 |
ttgtgttagcacaatctgcttttatggctttgcagactgcatcatccttttggcttgctattgcgatcgaaattccaaaagtaacgagtgccaacttgat |
247 |
Q |
| |
|
| ||||||||||||| || ||||| | |||||||||| |||| |||||||||||||||||||| || ||||||| ||| ||| | ||||||| |||||| |
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|
| T |
5314729 |
tcatgttagcacaatccgcatttatagttttgcagactacatcctccttttggcttgctattgccattgaaattcaaaacgtatctagtgccaccttgat |
5314828 |
T |
|
| Q |
248 |
tggagtttattcattaatttctttcactggtgttatgtttgtatatataaggtcttacttgatggcgcgtctcggattaaatgcttctattgcctacttc |
347 |
Q |
| |
|
||||||||||||||||| |||||| || | || ||||||||||| | ||||||||||||| || |||||||||||| ||||||| ||||| |||| |
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|
| T |
5314829 |
tggagtttattcattaacttcttttgctagcattttgtttgtatatctgaggtcttacttgaatgcatatctcggattaaaagcttctaatgccttcttc |
5314928 |
T |
|
| Q |
348 |
tctagcttcactacagctatcttcaattctccaa |
381 |
Q |
| |
|
|| |||||||||| ||||||||||||| |||||| |
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|
| T |
5314929 |
tcaagcttcactaaagctatcttcaatgctccaa |
5314962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 51 - 379
Target Start/End: Complemental strand, 5289711 - 5289383
Alignment:
| Q |
51 |
cttacaaaagaggaagaaaaagaggttggtgatgttggctggaagccattctgggattatatatcttattccaagggatcattgatgctgtgttttattg |
150 |
Q |
| |
|
|||||| ||||||||||||||| | ||||| ||||||| ||||||||||| ||||||||||| ||||||||| || |||| ||||||||| | || |
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|
| T |
5289711 |
cttacacaagaggaagaaaaagtgattggtaatgttggatggaagccattttgggattatattaattattccaaagggacattcatgctgtgtatgatca |
5289612 |
T |
|
| Q |
151 |
tgttagcacaatctgcttttatggctttgcagactgcatcatccttttggcttgctattgcgatcgaaattccaaaagtaacgagtgccaacttgattgg |
250 |
Q |
| |
|
||||| ||||||||| ||||||||||||||| ||| ||||| ||| ||||||||||||||| || ||||||||||||||||| | |||| ||||||||| |
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|
| T |
5289611 |
tgttatcacaatctggttttatggctttgcaaacttcatcaacctattggcttgctattgccattgaaattccaaaagtaactaatgccgccttgattgg |
5289512 |
T |
|
| Q |
251 |
agtttattcattaatttctttcactggtgttatgtttgtatatataaggtcttacttgatggcgcgtctcggattaaatgcttctattgcctacttctct |
350 |
Q |
| |
|
||||||| ||||||||||||| || ||| | ||||| ||| ||||||||||||||| || | | | |||||||| ||||||| || | |||||| |
|
|
| T |
5289511 |
agtttatgcattaatttctttttctagtgctgcttttgtttatgtaaggtcttacttgactgcacttttgggattaaaagcttctactgttttcttctca |
5289412 |
T |
|
| Q |
351 |
agcttcactacagctatcttcaattctcc |
379 |
Q |
| |
|
|||||||||||||||||||||||| |||| |
|
|
| T |
5289411 |
agcttcactacagctatcttcaatgctcc |
5289383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 49 - 383
Target Start/End: Original strand, 5307668 - 5308002
Alignment:
| Q |
49 |
aacttacaaaagaggaagaaaaagaggttggtgatgttggctggaagccattctgggattatatatcttattccaagggatcattgatgctgtgttttat |
148 |
Q |
| |
|
|||||||| ||||||||||||||| | |||| ||||||| ||||||||||| ||||||||| | ||||||||| || |||| ||||||||||| || |
|
|
| T |
5307668 |
aacttacacaagaggaagaaaaagtgattggcaatgttggatggaagccattttgggattatgttaattattccaaagggacattcatgctgtgtttgat |
5307767 |
T |
|
| Q |
149 |
tgtgttagcacaatctgcttttatggctttgcagactgcatcatccttttggcttgctattgcgatcgaaattccaaaagtaacgagtgccaacttgatt |
248 |
Q |
| |
|
||||| ||| |||||| |||| |||||||||||||| ||||| |||||||||||||||| | || ||||||||||||||||| | || || ||||||| |
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|
| T |
5307768 |
tgtgtcagcccaatctatttttttggctttgcagacttcatcaaccttttggcttgctataaccattgaaattccaaaagtaaccaatgtcaccttgatt |
5307867 |
T |
|
| Q |
249 |
ggagtttattcattaatttctttcactggtgttatgtttgtatatataaggtcttacttgatggcgcgtctcggattaaatgcttctattgcctacttct |
348 |
Q |
| |
|
||||||||| ||||||||||||| || ||| | ||| ||||| |||| |||||||||| || | | | |||||||| ||||||| ||| | ||||| |
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|
| T |
5307868 |
ggagtttatgcattaatttctttttctagtgctgcttttatatatgtaagatcttacttgactgcacttttgggattaaaagcttctactgctttcttct |
5307967 |
T |
|
| Q |
349 |
ctagcttcactacagctatcttcaattctccaatg |
383 |
Q |
| |
|
| |||||||||||||||||||||||| |||||||| |
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|
| T |
5307968 |
caagcttcactacagctatcttcaatgctccaatg |
5308002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 51 - 383
Target Start/End: Complemental strand, 14948916 - 14948584
Alignment:
| Q |
51 |
cttacaaaagaggaagaaaaagaggttggtgatgttggctggaagccattctgggattatatatcttattccaagggatcattgatgctgtgttttattg |
150 |
Q |
| |
|
|||||| ||||||||||||||| | |||| ||||||| ||||||||||||||||||||| | |||||||| || ||| ||| ||||||| || |
|
|
| T |
14948916 |
cttacacaagaggaagaaaaagtgactggtaatgttggatggaagccattctgggattatgttaactattccaaagggacatccatgatgtgtttcatca |
14948817 |
T |
|
| Q |
151 |
tgttagcacaatctgcttttatggctttgcagactgcatcatccttttggcttgctattgcgatcgaaattccaaaagtaacgagtgccaacttgattgg |
250 |
Q |
| |
|
|||||||||||||||||||| |||| || ||||||| |||||||||||||||| || || ||||||||||||||||| | ||||||||||||||| |
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|
| T |
14948816 |
tgttagcacaatctgctttttatacttttcaatttgcatcaaccttttggcttgctatagccattgaaattccaaaagtaactaatgccaacttgattgg |
14948717 |
T |
|
| Q |
251 |
agtttattcattaatttctttcactggtgttatgtttgtatatataaggtcttacttgatggcgcgtctcggattaaatgcttctattgcctacttctct |
350 |
Q |
| |
|
|||||| |||||||||||||| | | || |||||||| |||||||| ||||||||| || | ||| |||||||| ||||| ||| | |||||| |
|
|
| T |
14948716 |
agtttactcattaatttcttttgttagcgtcgtgtttgtacatataaggacttacttgactgcacttcttggattaaaagcttccgctgctttcttctca |
14948617 |
T |
|
| Q |
351 |
agcttcactacagctatcttcaattctccaatg |
383 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
14948616 |
agcttcactacagctatcttcaatgctccaatg |
14948584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 48 - 309
Target Start/End: Complemental strand, 5281682 - 5281421
Alignment:
| Q |
48 |
caacttacaaaagaggaagaaaaagaggttggtgatgttggctggaagccattctgggattatatatcttattccaagggatcattgatgctgtgtttta |
147 |
Q |
| |
|
||||||||| ||||||||||||||| | ||||| | ||||| ||||||||||| ||||||||||| ||||||||| || ||| ||| ||||||| | |
|
|
| T |
5281682 |
caacttacacaagaggaagaaaaagtgattggtaacgttggatggaagccattttgggattatattaattattccaaagggacatccatgttgtgtttaa |
5281583 |
T |
|
| Q |
148 |
ttgtgttagcacaatctgcttttatggctttgcagactgcatcatccttttggcttgctattgcgatcgaaattccaaaagtaacgagtgccaacttgat |
247 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||| ||| ||||| ||| |||||||||||||| || ||||||||||||||||| | | ||| |||||| |
|
|
| T |
5281582 |
tcatgttagcacaatctggttttatggctttgcaaacttcatcaacctattggcttgctattggcattgaaattccaaaagtaactaataccaccttgat |
5281483 |
T |
|
| Q |
248 |
tggagtttattcattaatttctttcactggtgttatgtttgtatatataaggtcttacttga |
309 |
Q |
| |
|
|||||||||| ||||||||||||| || ||| | ||||||||| ||||||||||||||| |
|
|
| T |
5281482 |
tggagtttatgcattaatttctttttctagtgctgcttttgtatatttaaggtcttacttga |
5281421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 51 - 383
Target Start/End: Original strand, 15126436 - 15126768
Alignment:
| Q |
51 |
cttacaaaagaggaagaaaaagaggttggtgatgttggctggaagccattctgggattatatatcttattccaagggatcattgatgctgtgttttattg |
150 |
Q |
| |
|
|||||| ||||||||||||||| | ||||| ||||||| ||||||||| | ||||||||||| ||||||||| || |||||||| |||||| | |
|
|
| T |
15126436 |
cttacacaagaggaagaaaaagtgattggtaatgttggatggaagccactttgggattatattaattattccaatgggacattgatgtcgtgtttggtca |
15126535 |
T |
|
| Q |
151 |
tgttagcacaatctgcttttatggctttgcagactgcatcatccttttggcttgctattgcgatcgaaattccaaaagtaacgagtgccaacttgattgg |
250 |
Q |
| |
|
| |||| ||||| | |||| |||||||||||||| |||| |||||||||||||| || || ||||||||||||||||| | ||| ||||||||| |
|
|
| T |
15126536 |
tattaggacaatgttgttttttggctttgcagacttcatcgaacttttggcttgctacagccattgaaattccaaaagtaactgataccaccttgattgg |
15126635 |
T |
|
| Q |
251 |
agtttattcattaatttctttcactggtgttatgtttgtatatataaggtcttacttgatggcgcgtctcggattaaatgcttctattgcctacttctct |
350 |
Q |
| |
|
||||||| ||||| | ||| | || || | ||||||||| ||||||||||||| || | | | |||||||| ||||| | || | |||||| |
|
|
| T |
15126636 |
agtttatgcattactctctatttctagtacttcttttgtatatgtaaggtcttactttgctgcacttttgggattaaaagcttcgacggctttcttctca |
15126735 |
T |
|
| Q |
351 |
agcttcactacagctatcttcaattctccaatg |
383 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| |
|
|
| T |
15126736 |
agcttcactacatctatcttcaatgctccaatg |
15126768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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