View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16473_low_3 (Length: 496)

Name: NF16473_low_3
Description: NF16473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16473_low_3
NF16473_low_3
[»] chr8 (6 HSPs)
chr8 (12-475)||(30634233-30634696)
chr8 (12-228)||(1175000-1175219)
chr8 (19-118)||(1173508-1173607)
chr8 (12-78)||(35673336-35673402)
chr8 (29-86)||(35674858-35674915)
chr8 (47-112)||(44687154-44687219)
[»] chr1 (4 HSPs)
chr1 (12-228)||(44782187-44782405)
chr1 (12-228)||(46679591-46679808)
chr1 (49-112)||(33773206-33773269)
chr1 (154-210)||(9217542-9217597)
[»] chr5 (8 HSPs)
chr5 (12-228)||(25725812-25726028)
chr5 (12-228)||(40382761-40382977)
chr5 (12-210)||(10410708-10410904)
chr5 (12-183)||(25502029-25502199)
chr5 (15-210)||(10412281-10412474)
chr5 (12-183)||(25506942-25507113)
chr5 (12-112)||(8081508-8081608)
chr5 (12-78)||(6742582-6742648)
[»] chr2 (12 HSPs)
chr2 (12-228)||(45035046-45035261)
chr2 (12-228)||(45033251-45033466)
chr2 (12-183)||(1015657-1015827)
chr2 (23-165)||(33187188-33187330)
chr2 (12-183)||(17308630-17308793)
chr2 (12-183)||(30191518-30191686)
chr2 (12-79)||(14007778-14007845)
chr2 (48-112)||(25302815-25302879)
chr2 (47-110)||(41602457-41602520)
chr2 (47-112)||(25306810-25306875)
chr2 (137-183)||(4399574-4399620)
chr2 (12-77)||(3372456-3372521)
[»] chr4 (5 HSPs)
chr4 (12-180)||(4847692-4847860)
chr4 (131-228)||(11809887-11809984)
chr4 (12-183)||(28395557-28395731)
chr4 (66-206)||(25054251-25054389)
chr4 (47-112)||(8005909-8005974)
[»] chr7 (4 HSPs)
chr7 (19-228)||(29924538-29924729)
chr7 (19-183)||(21464441-21464611)
chr7 (151-210)||(964997-965055)
chr7 (47-112)||(30511162-30511227)
[»] chr6 (5 HSPs)
chr6 (19-183)||(34350345-34350509)
chr6 (12-165)||(15688987-15689140)
chr6 (104-183)||(24544664-24544742)
chr6 (36-112)||(9373599-9373675)
chr6 (132-177)||(31528826-31528873)
[»] chr3 (6 HSPs)
chr3 (12-183)||(28133655-28133826)
chr3 (12-211)||(4602202-4602399)
chr3 (12-228)||(27682085-27682297)
chr3 (12-109)||(41874519-41874616)
chr3 (12-165)||(4609059-4609211)
chr3 (47-112)||(35244170-35244235)
[»] scaffold0570 (1 HSPs)
scaffold0570 (85-165)||(3010-3094)


Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 12 - 475
Target Start/End: Original strand, 30634233 - 30634696
Alignment:
Q  12 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 111  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||  |||||||||||||||||||||||||||||||    
T  30634233 atgaatcaaaggattctatggttttaggtcaaatgcaatggaaagatagattctgtaattctctctatgagtcattactaagaaacaattgtataaaaga 30634332  T
Q  112 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctacatagataacttgctctccaagttatctt 211  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30634333 taatgaaatagtacataggtgtagcttatttatagtgacttggagtaactaactccctaactaactttctacatagataacttgctctccaagttatctt 30634432  T
Q  212 cttcactatactctaattaatatcttcaaaatatgtgccccaatgctcaatgcagcaattcaatgttacatataatgaattaagttgattctgaaaaaca 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30634433 cttcactatactctaattaatatcttcaaaatatgtgccccaatgctcaatgcagtaattcaatgttacatataatgaattaagttgattctgaaaaaca 30634532  T
Q  312 aatgcgtaaattttatatgaaatttaaaaacaatcatatatcaacttttttctttgtaagtattcataccatatcgggaggaatgttgaaaggaggaatg 411  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30634533 aatgtgtaaattttatatgaaatttaaaaacaatcatatatcaacttttttctttgtaagtattcataccatatcgggaggaatgttgaaaggaggaatg 30634632  T
Q  412 ttgcacactactctctaacaaacactttatagcacattttgtcttagtgattgaatttaaacgc 475  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  30634633 ttgcacattactctctaacaaacactttatagcacattttgtctaggtgattgaatttaaacgc 30634696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 1175219 - 1175000
Alignment:
Q  12 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattacta---agaaacaattgtataaa 108  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||| | ||||| |||||||| ||   |||||||||||||||||    
T  1175219 atgaattaaaggattctatggttctaggtcaaatgtaatgaaaagatagattgtgtaattttttctaggagtcattattaccaagaaacaattgtataaa 1175120  T
Q  109 agataatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctacatagataacttgctctccaagttat 208  Q
    ||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1175119 agataatgaaatagtacataggtgtaacttatttatagtgacttggagtaactaactccccacctaactttctacatagataacttgctctccaagttat 1175020  T
Q  209 cttcttcactatactctaat 228  Q
    ||||||||||||||||||||    
T  1175019 cttcttcactatactctaat 1175000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 1173607 - 1173508
Alignment:
Q  19 aaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaagataatgaa 118  Q
    ||||||||| ||  |||||| |||||||||||| ||| ||||||||  ||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  1173607 aaaggattccataattctagatcaaatgcaatgaaaaaatagattgtataattctctctaggagtcattaccaagaaacaattgtataaaagataatgaa 1173508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 35673336 - 35673402
Alignment:
Q  12 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctcta 78  Q
    ||||| || ||||||| ||||||||| ||||||||||||||||||||||||||  ||||||||||||    
T  35673336 atgaaatagaggattccatggttctaagtcaaatgcaatggaaagatagattgtataattctctcta 35673402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 35674858 - 35674915
Alignment:
Q  29 atggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcat 86  Q
    ||||||||| |||||||||||||||||| ||||||| |||||||||||||| ||||||    
T  35674858 atggttctaagtcaaatgcaatggaaaggtagattgtgtaattctctctaggagtcat 35674915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 44687219 - 44687154
Alignment:
Q  47 caatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaagat 112  Q
    ||||||||||||||| ||| |||| |||||||| | |||| |||||||||||||||||||||||||    
T  44687219 caatggaaagatagaatgcataatgctctctaggaatcatcactaagaaacaattgtataaaagat 44687154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 180; Significance: 5e-97; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 44782187 - 44782405
Alignment:
Q  12 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 111  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  44782187 atgaattaaaggattccatggttctaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcattactaagaaacaattgtataaaaga 44782286  T
Q  112 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctacatagataacttgctctccaagttatct- 210  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||     
T  44782287 taatgaaatagtacataggtgtagcttatttatagtgacttggagtaactaactccctaactaactttctacatagataacttgctctctaagttatctt 44782386  T
Q  211 -tcttcactatactctaat 228  Q
     ||||||||||||||||||    
T  44782387 ctcttcactatactctaat 44782405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 46679808 - 46679591
Alignment:
Q  12 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 111  Q
    |||||| ||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||    
T  46679808 atgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgtgtaattctctctaggagtcattaccaagaaacaattgtataaaaga 46679709  T
Q  112 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctac-atagataacttgctctccaagttatct 210  Q
    | ||||| || | |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||| |  ||||||| |||||||||||    
T  46679708 tgatgaagtagtacataggtgtagcttatttatagtgacttggagtaactaactccctaactaattttctactatagtttgcttgctccccaagttatct 46679609  T
Q  211 tcttcactatactctaat 228  Q
    ||||||||||||||||||    
T  46679608 tcttcactatactctaat 46679591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 33773269 - 33773206
Alignment:
Q  49 atggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaagat 112  Q
    ||||||||||||| ||| |||| |||||||| |||||| ||||| |||||||||||||||||||    
T  33773269 atggaaagatagaatgcataatactctctaggagtcatcactaaaaaacaattgtataaaagat 33773206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 9217597 - 9217542
Alignment:
Q  154 gagtaactaactccccaactaactttctacatagataacttgctctccaagttatct 210  Q
    |||||| |||||||| |||||||||||||| ||||| |||||||||||||| |||||    
T  9217597 gagtaattaactccctaactaactttctac-tagattacttgctctccaagatatct 9217542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 173; Significance: 8e-93; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 25725812 - 25726028
Alignment:
Q  12 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 111  Q
    |||||| ||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||| ||||||||||    
T  25725812 atgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgtgtaattctctctaggagtcattaccaagaaacaatcgtataaaaga 25725911  T
Q  112 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctacatagataacttgctctccaagttatctt 211  Q
    |||||||||| | |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25725912 taatgaaatagtacataggtgtaacttatttatagtgacttggagtaactaactccctaactaactttctacatagataacttgctctccaagttatctt 25726011  T
Q  212 cttcactatactctaat 228  Q
    |||||||||||||||||    
T  25726012 cttcactatactctaat 25726028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 40382761 - 40382977
Alignment:
Q  12 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 111  Q
    |||||| ||||||||  || |||||||||||||||||||||||||||| |||| |||||||||||||| | |||||||||||||||||||||| ||||||    
T  40382761 atgaatcaaaggattacattgttctaggtcaaatgcaatggaaagataaattgtgtaattctctctaggaatcattactaagaaacaattgtaaaaaaga 40382860  T
Q  112 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctacatagataacttgctctccaagttatctt 211  Q
    |||||||||| |  ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||| ||||||    
T  40382861 taatgaaatagtatataggtgtagcttatttatagtgacttggagtacctaactccctaactaactttctacatagataacttactctccaagatatctt 40382960  T
Q  212 cttcactatactctaat 228  Q
    |||||||||||||||||    
T  40382961 cttcactatactctaat 40382977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 10410904 - 10410708
Alignment:
Q  12 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 111  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||  | ||||  ||| || ||||||||    
T  10410904 atgaatcaaaggattccatggttctaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcatcccaaagatgcaaatgaataaaaga 10410805  T
Q  112 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctacatagataacttgctctccaagttatct 210  Q
    |  ||||||| | ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||| | ||||||||||||||||||||    
T  10410804 t-gtgaaatagtacataggtgtagcttatttatagtgatttggagtaactaactccctaactaactttctac-taggttacttgctctccaagttatct 10410708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 12 - 183
Target Start/End: Original strand, 25502029 - 25502199
Alignment:
Q  12 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 111  Q
    |||||| | ||||||| |||||||||| |||||||||||||||| |||||||| |||||||||||||| ||||||||  |||||||||||||||||||||    
T  25502029 atgaatcagaggattccatggttctagatcaaatgcaatggaaatatagattgtgtaattctctctaggagtcattatcaagaaacaattgtataaaaga 25502128  T
Q  112 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctac 183  Q
    | ||| |||| | ||||| |||| |||||||||||||| |||||||||||||||||| ||||||||||||||    
T  25502129 t-atggaatagtacatagatgtaacttatttatagtgaattggagtaactaactccctaactaactttctac 25502199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 10412474 - 10412281
Alignment:
Q  15 aattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaagataa 114  Q
    ||||||||||||  |||||| ||||||||||||||| ||||||||||||| |||||| ||||||  | | || || ||||  ||| || ||||||||||     
T  10412474 aattaaaggatttcatggttttaggtcaaatgcaatcgaaagatagattgtgtaattttctctaagaattatcacaaagatgcaaatgaataaaagata- 10412376  T
Q  115 tgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctacatagataacttgctctccaagttatct 210  Q
    ||||||| | ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||| | ||||||||||||||||||||    
T  10412375 tgaaatagtacataggtgtagcttatttatagtgatttggagtaactaactccctaactaactttctac-taggttacttgctctccaagttatct 10412281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 12 - 183
Target Start/End: Original strand, 25506942 - 25507113
Alignment:
Q  12 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 111  Q
    |||||| ||||||||| |||||| ||| ||||||||||||||||||||||||  |||||||||||| | | ||||||| ||||||||||||||||||| |    
T  25506942 atgaataaaaggattccatggttttagatcaaatgcaatggaaagatagattatgtaattctctctgggattcattacaaagaaacaattgtataaaaaa 25507041  T
Q  112 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaact-aactccccaactaactttctac 183  Q
    | ||| |||| | ||||||||||||||||||||||||| ||||||||||| ||||||| || |||||||||||    
T  25507042 t-atggaatagtacataggtgtagcttatttatagtgaattggagtaactaaactccctaagtaactttctac 25507113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 8081608 - 8081508
Alignment:
Q  12 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 111  Q
    |||||| ||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  8081608 atgaatcaaagggttccatggttctaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcattactaagaaacaattgtataaaaga 8081509  T
Q  112 t 112  Q
    |    
T  8081508 t 8081508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 6742648 - 6742582
Alignment:
Q  12 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctcta 78  Q
    |||||| ||| ||||| || ||||||| ||||||||||||||||||||||||| ||| |||||||||    
T  6742648 atgaatcaaacgattccatagttctagatcaaatgcaatggaaagatagattgtgtatttctctcta 6742582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 6e-69; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 45035261 - 45035046
Alignment:
Q  12 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 111  Q
    |||||| ||||||||| |||||||||| |||||||||||||||||||||||||  || |||||||||| |||||| || ||||  ||| || ||||||||    
T  45035261 atgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgtatagttctctctaggagtcatcacaaagatgcaaatgaataaaaga 45035162  T
Q  112 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctacatagataacttgctctccaagttatctt 211  Q
    |  ||||||| | ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  45035161 tt-tgaaatattacataggtgtagcttatttatagtgatttggagtaactaactccctaactaactttctacatagataacttgctctccaagttatctt 45035063  T
Q  212 cttcactatactctaat 228  Q
    || ||||||||||||||    
T  45035062 ctacactatactctaat 45035046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 45033466 - 45033251
Alignment:
Q  12 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 111  Q
    |||||| ||| ||||| |||||||||| |||||||||||||||||||||||||  ||||| ||||||| |||||| || ||||  ||| || ||||||||    
T  45033466 atgaatcaaaagattccatggttctagatcaaatgcaatggaaagatagattgtataattttctctaggagtcatcacaaagatgcaaatgaataaaaga 45033367  T
Q  112 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctacatagataacttgctctccaagttatctt 211  Q
    || |||| || | ||||||||||||||||||| ||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  45033366 ta-tgaattagtacataggtgtagcttatttacagtgatttggggtaactaactccctaactaactttctacatagataacttgctctccaagttatctt 45033268  T
Q  212 cttcactatactctaat 228  Q
    |||||||||||||||||    
T  45033267 cttcactatactctaat 45033251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 12 - 183
Target Start/End: Complemental strand, 1015827 - 1015657
Alignment:
Q  12 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 111  Q
    |||||| ||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||| | |||| |||| |||||||||||||||||||||    
T  1015827 atgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgtgtaattctctcttggagtcgttaccaagaaacaattgtataaaaga 1015728  T
Q  112 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctac 183  Q
    | ||| |||| | ||||||||| ||||||||||||||| |||||||||||||||||  ||||||||||||||    
T  1015727 t-atggaatagtacataggtgtggcttatttatagtgatttggagtaactaactccgtaactaactttctac 1015657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 23 - 165
Target Start/End: Original strand, 33187188 - 33187330
Alignment:
Q  23 gattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaagataatgaaataa 122  Q
    ||||| || ||||||||||||||| ||||||||||||||||| |||||| ||||||  ||||||||| |||||||||||||||||||||||||||||||     
T  33187188 gattccattgttctaggtcaaatgtaatggaaagatagattgtgtaattatctctatgagtcattaccaagaaacaattgtataaaagataatgaaatag 33187287  T
Q  123 tgcataggtgtagcttatttatagtgacttggagtaactaact 165  Q
    | |||||||||||||||||||||||||||||||||||||||||    
T  33187288 tacataggtgtagcttatttatagtgacttggagtaactaact 33187330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 12 - 183
Target Start/End: Complemental strand, 17308793 - 17308630
Alignment:
Q  12 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 111  Q
    |||||| ||||||||| || ||||||| ||||||||||||||||||||||||| ||||||| |||||| ||||||||| |||||||||||||||||||||    
T  17308793 atgaatcaaaggattccattgttctagatcaaatgcaatggaaagatagattgtgtaattcactctaggagtcattaccaagaaacaattgtataaaaga 17308694  T
Q  112 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctac 183  Q
    | ||||       || ||||||  |||||||||||||| |||||||||||||||||| ||||||||||||||    
T  17308693 t-atga-------caaaggtgtgacttatttatagtgatttggagtaactaactccctaactaactttctac 17308630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 183
Target Start/End: Complemental strand, 30191686 - 30191518
Alignment:
Q  12 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 111  Q
    |||||| ||||||||| |||||||||| |||||| ||||| |||||||||||   |||||||||||| || ||||||| |||||||||||||||||||||    
T  30191686 atgaatcaaaggattccatggttctagatcaaatacaatgaaaagatagattatataattctctctaaaaatcattaccaagaaacaattgtataaaaga 30191587  T
Q  112 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctac 183  Q
    | || |||| || || ||| ||   ||||||||||||| ||||  ||||||| |||| ||||||||||||||    
T  30191586 t-ataaaat-atacacagg-gtgatttatttatagtgatttggcataactaaatccctaactaactttctac 30191518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 14007845 - 14007778
Alignment:
Q  12 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctag 79  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||| |||||  |||||||||||||    
T  14007845 atgaatcaaaggattccatggttctaggtcaaatgcaatggaaagatggattgtctaattctctctag 14007778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 25302879 - 25302815
Alignment:
Q  48 aatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaagat 112  Q
    |||||||||||||| ||| |||| |||||||| |||||| |||||||||||||||||||||||||    
T  25302879 aatggaaagatagaatgcataatgctctctaggagtcatcactaagaaacaattgtataaaagat 25302815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 47 - 110
Target Start/End: Complemental strand, 41602520 - 41602457
Alignment:
Q  47 caatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaag 110  Q
    ||||||||||||||| ||| |||| |||||||| |||||| |||||||||||||||||||||||    
T  41602520 caatggaaagatagaatgcataatgctctctaggagtcatcactaagaaacaattgtataaaag 41602457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 25306875 - 25306810
Alignment:
Q  47 caatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaagat 112  Q
    ||||||||||||||| ||| |||| |||||||  |||||| |||||||||||||||||||||||||    
T  25306875 caatggaaagatagaatgcataatgctctctatgagtcatcactaagaaacaattgtataaaagat 25306810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 4399574 - 4399620
Alignment:
Q  137 ttatttatagtgacttggagtaactaactccccaactaactttctac 183  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||    
T  4399574 ttatttatagtgagttggagtaactaactccctaactaactttctac 4399620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 3372456 - 3372521
Alignment:
Q  12 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctct 77  Q
    |||||| ||| ||||| || |||||||||||||| |||||||||||||||||   |||||||||||    
T  3372456 atgaatcaaaagattccatagttctaggtcaaatacaatggaaagatagattctataattctctct 3372521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 12 - 180
Target Start/End: Original strand, 4847692 - 4847860
Alignment:
Q  12 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 111  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||  |||||||||| ||||||||||||| |||||||||||||||| ||||    
T  4847692 atgaattaaaggattccatggttctaggtcaaatgtaatggaaagatagattttgtaattctctatagaagtcattaccaagaaacaattgtatataaga 4847791  T
Q  112 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttc 180  Q
    || ||| ||| | ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4847792 tagtgatatagtacatagatgtagcttatttatagtgacttggagtaactaactccctaactaactttc 4847860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 131 - 228
Target Start/End: Original strand, 11809887 - 11809984
Alignment:
Q  131 tgtagcttatttatagtgacttggagtaactaactccccaactaactttctacatagataacttgctctccaagttatcttcttcactatactctaat 228  Q
    ||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11809887 tgtagtttgtttatagtgacttggagtaactaactccctaactaactttctacatagataacttgctctccaagttatcttcttcactatactctaat 11809984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 12 - 183
Target Start/End: Original strand, 28395557 - 28395731
Alignment:
Q  12 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattacta----agaaacaattgtataa 107  Q
    |||||| ||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| || |    ||| | || || ||||    
T  28395557 atgaatcaaaggattccatggttttaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcatcacaaagatagatagaaatgaataa 28395656  T
Q  108 aagataatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctac 183  Q
    ||||| |||||||| | ||  ||||||||||||||||||||| ||||||||| |||||||| |||||| |||||||    
T  28395657 aagat-atgaaatagtacagtggtgtagcttatttatagtgatttggagtaaataactccctaactaattttctac 28395731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 66 - 206
Target Start/End: Complemental strand, 25054389 - 25054251
Alignment:
Q  66 gtaattctctctagaagtcattactaagaaacaattgtataaaagataatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaact 165  Q
    |||||||||||| |||||||| || ||||  |||||| |||||||||  ||||||| | ||||||||||||||||||||||||| |||||||||||||||    
T  25054389 gtaattctctctggaagtcatcacaaagatgcaattgaataaaagatg-tgaaatagtacataggtgtagcttatttatagtgatttggagtaactaact 25054291  T
Q  166 ccccaactaactttctacatagataacttgctctccaagtt 206  Q
    ||| ||||||| |||||| ||  | ||||||||||||||||    
T  25054290 ccctaactaacgttctac-tatgttacttgctctccaagtt 25054251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 8005974 - 8005909
Alignment:
Q  47 caatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaagat 112  Q
    ||||||||||||||| ||| |||| |||||||| |||||| || |||||||||||| |||||||||    
T  8005974 caatggaaagatagaatgcataatgctctctaggagtcatcacaaagaaacaattgaataaaagat 8005909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 5e-54; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 29924729 - 29924538
Alignment:
Q  19 aaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaagataatgaa 118  Q
    ||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||| ||||||||||||| ||    
T  29924729 aaaggattccatagttctaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcattactaaaaaacaattatataaaagataataaa 29924630  T
Q  119 ataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctacatagataacttgctctcc-aagttatcttcttcac 217  Q
           ||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29924629 -------ataggtgtagcttatttatagtgacttggagt------------aactaactttctacatagataacttgctctccaaagttatcttcttcac 29924549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 21464611 - 21464441
Alignment:
Q  19 aaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattct--ctctagaagtcattactaag-----aaacaattgtataaaaga 111  Q
    |||| |||| |||||||||| ||||||||||||||||||||||||| ||||||||  |||||| ||||||||| |||     |||  | || ||||||||    
T  21464611 aaagaattccatggttctagatcaaatgcaatggaaagatagattgtgtaattctctctctaggagtcattacaaaggtagaaaatgaatgaataaaaga 21464512  T
Q  112 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctac 183  Q
     | | ||||| | |||| |||||||||||||| ||||| |||||||||||||| ||| ||||||||||||||    
T  21464511 -agtaaaatagtacataagtgtagcttatttacagtgatttggagtaactaaccccctaactaactttctac 21464441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 210
Target Start/End: Complemental strand, 965055 - 964997
Alignment:
Q  151 ttggagtaactaactccccaactaactttctacatagataacttgctctccaagttatct 210  Q
    |||||||||||||||||| |||||||||||||| || || ||||||||||||||||||||    
T  965055 ttggagtaactaactccctaactaactttctac-tatattacttgctctccaagttatct 964997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 30511227 - 30511162
Alignment:
Q  47 caatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaagat 112  Q
    ||||| ||||||||| ||| ||||  ||||||| ||| || | |||||||||||||||||||||||    
T  30511227 caatgaaaagatagaatgcataatgttctctaggagttatcagtaagaaacaattgtataaaagat 30511162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 7e-50; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 34350345 - 34350509
Alignment:
Q  19 aaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaagataatgaa 118  Q
    ||||||||| ||||||||||||||||| ||| ||||| |||| ||  |||||||||| ||| ||||||||||||||||||||||||||||||||| ||||    
T  34350345 aaaggattccatggttctaggtcaaatacaacggaaaaatagtttatgtaattctctttaggagtcattactaagaaacaattgtataaaagatagtgaa 34350444  T
Q  119 ataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctac 183  Q
    ||| | ||||||||||| ||||||||| ||| |||||||||||||||||| ||||||||||||||    
T  34350445 atagtacataggtgtagtttatttataatgatttggagtaactaactccctaactaactttctac 34350509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 12 - 165
Target Start/End: Complemental strand, 15689140 - 15688987
Alignment:
Q  12 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 111  Q
    |||||| ||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||| || |||| | || || |||||| |    
T  15689140 atgaatcaaaggattccatgattctaggtcaaatgcaatggaaagatagattgtgtaattctctctag-agtcatcacaaagatagaaatgaataaaaaa 15689042  T
Q  112 ta-atgaaataatgcataggtgtagcttatttatagtgacttggagtaactaact 165  Q
     | |  ||||| | |||||| |||||||||||||||||| |||||||||||||||    
T  15689041 gatagaaaatagtacataggagtagcttatttatagtgatttggagtaactaact 15688987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 104 - 183
Target Start/End: Complemental strand, 24544742 - 24544664
Alignment:
Q  104 ataaaagataatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctac 183  Q
    |||||||||| ||||||| | ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  24544742 ataaaagata-tgaaatagtacataggtgtagcttatttatagtgatttggagtaactaactccctaactaactttctac 24544664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 9373599 - 9373675
Alignment:
Q  36 taggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaagat 112  Q
    |||||||||||||||||||||||||| || |||||| ||| ||| |||||| || |||| | || || |||||||||    
T  9373599 taggtcaaatgcaatggaaagatagaatgtgtaattttctataggagtcataacaaagatataaatgaataaaagat 9373675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 31528873 - 31528826
Alignment:
Q  132 gtagcttatttatagtg--acttggagtaactaactccccaactaact 177  Q
    ||||||||||||||| |  |||||||||||||||||||| ||||||||    
T  31528873 gtagcttatttatagagtaacttggagtaactaactccctaactaact 31528826  T

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Target: chr3 (Bit Score: 96; Significance: 7e-47; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 12 - 183
Target Start/End: Complemental strand, 28133826 - 28133655
Alignment:
Q  12 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 111  Q
    |||||| ||||||||| |||||||||| ||||||||||||||||| || |||| ||| |||||||||| |||||| || ||||  |||||| ||||||||    
T  28133826 atgaatcaaaggattccatggttctagatcaaatgcaatggaaaggtaaattgtgtagttctctctaggagtcatcacaaagatgcaattgaataaaaga 28133727  T
Q  112 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctac 183  Q
    |  ||||||| | |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  28133726 tggtgaaatagtacataggtgtagcttatttatagtgacttggagtaactaactctctaactaactttctac 28133655  T

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Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 12 - 211
Target Start/End: Complemental strand, 4602399 - 4602202
Alignment:
Q  12 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 111  Q
    |||||| ||||||||| |||||||||| ||||||||||||||||| || ||||  || |||||||||  |||||| || ||||  |||||  ||||||||    
T  4602399 atgaatcaaaggattccatggttctagatcaaatgcaatggaaaggtaaattgtatagttctctctatgagtcataacaaagatgcaattaaataaaaga 4602300  T
Q  112 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctacatagataacttgctctccaagttatctt 211  Q
    || ||||||| | ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||  | |||||||||||||||||||||    
T  4602299 ta-tgaaatagtacataggtgtagcttatttatagtgatttggagtaactaactccctaactaactttctac-tatgttacttgctctccaagttatctt 4602202  T

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Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 27682297 - 27682085
Alignment:
Q  12 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 111  Q
    |||||| ||||||||| |||||||||| ||||||||||||||||| || |||| ||| |||||||||| |||||| || ||||  ||| || ||||||||    
T  27682297 atgaatcaaaggattccatggttctagatcaaatgcaatggaaaggtaaattgtgtagttctctctaggagtcatcacaaagatgcaaatgaataaaaga 27682198  T
Q  112 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctacatagataacttgctctccaagttatctt 211  Q
    |  || |||| | ||||||| | |||||||||| |||| |||||||||||||||||| |||||||||| ||| |||||  |||||||||||||||||||     
T  27682197 t-gtggaatagtacataggtcttgcttatttattgtgatttggagtaactaactccctaactaactttatac-tagattgcttgctctccaagttatct- 27682101  T
Q  212 cttcactatactctaat 228  Q
      |||||||||||||||    
T  27682100 -ctcactatactctaat 27682085  T

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Target: chr3; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 41874616 - 41874519
Alignment:
Q  12 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaa 109  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||| |||||||||||||||||||    
T  41874616 atgaatcaaaggattccatggttctaggtcaaatgcaatggaaagatagattttgtaattctctctaggagtcattaccaagaaacaattgtataaaa 41874519  T

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Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 12 - 165
Target Start/End: Complemental strand, 4609211 - 4609059
Alignment:
Q  12 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 111  Q
    |||||| ||||||||| || ||||||| ||||||||||| ||||| || ||||  || |||||||||| |||||| || ||||  |||||| ||||||||    
T  4609211 atgaatcaaaggattcaattgttctagatcaaatgcaattgaaaggtaaattgtatagttctctctagcagtcatcacaaagatgcaattgaataaaaga 4609112  T
Q  112 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaact 165  Q
    || ||||||| | ||||||||||||||||||||||||| |||||||||||||||    
T  4609111 ta-tgaaatagtacataggtgtagcttatttatagtgatttggagtaactaact 4609059  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 35244235 - 35244170
Alignment:
Q  47 caatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaagat 112  Q
    ||||||||||||||| ||| |||| |||||||| |||||| ||||||||| |||| ||||||||||    
T  35244235 caatggaaagatagaatgcataatgctctctaggagtcatcactaagaaaaaattatataaaagat 35244170  T

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Target: scaffold0570 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 85 - 165
Target Start/End: Original strand, 3010 - 3094
Alignment:
Q  85 attactaagaaacaattgtataaaaga----taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaact 165  Q
    ||||| |||||||||||||||||||||    || ||||||| | ||| |||||||| ||||||||||||||||||||||||||||    
T  3010 attaccaagaaacaattgtataaaagaaagatagtgaaatagtacatcggtgtagcatatttatagtgacttggagtaactaact 3094  T

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