View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16473_low_7 (Length: 372)
Name: NF16473_low_7
Description: NF16473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16473_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 365
Target Start/End: Original strand, 20210555 - 20210904
Alignment:
| Q |
16 |
atagtgacatcaatatagtggagggccttcttcatatctcttattggctatttagttaagtgatgccttcaacaaacagttttgttacctcaagggttct |
115 |
Q |
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| T |
20210555 |
atagtgacatcaatatagtggagggccttcttcatatctcttattggctaattagttaagtgatgccttcaacaaacagttttgttacctcaagggttct |
20210654 |
T |
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| Q |
116 |
agcatgcaatgtgtttttccctttcctttccctttcttttgtgtgtttggaattgatgtagaagggtttgggatgttacttcctttgatttatattgaca |
215 |
Q |
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| T |
20210655 |
agcattcatagtgtttttccctttcctttccctttcttttgtgtgtttggaattgatgtagaagggtttgggatgttacttcctttgatttatattgaca |
20210754 |
T |
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| Q |
216 |
attgtctaaccaagtggttgaagcgttggacttacgagattaataacgaatcgttgaaagaactcaattgtaaactctaacaaacggaaatgttgtttac |
315 |
Q |
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| T |
20210755 |
attgtctaaccaagtggttggagcgttggacttacgtgattaatgacgaatcgttgtaagaactcaattctaaattctaataaacggaaatgttgtttac |
20210854 |
T |
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| Q |
316 |
agcgaattttttcttcaagaaagcatcacgatcgctataccattcatctc |
365 |
Q |
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| T |
20210855 |
agcgaattttttcttcgagaaagcatcacgaccattataccatttatctc |
20210904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 302 - 359
Target Start/End: Original strand, 5623703 - 5623759
Alignment:
| Q |
302 |
gaaatgttgtttacagcgaattttttcttcaagaaagcatcacgatcgctataccatt |
359 |
Q |
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| T |
5623703 |
gaaatgctgtttacagcaaattttct-ttcaagaaagcatcacgaccgctataccatt |
5623759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 302 - 359
Target Start/End: Original strand, 21168990 - 21169046
Alignment:
| Q |
302 |
gaaatgttgtttacagcgaattttttcttcaagaaagcatcacgatcgctataccatt |
359 |
Q |
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|||||| |||||||||| |||||| | |||||||||||||||||| |||||||||||| |
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| T |
21168990 |
gaaatgctgtttacagcaaattttct-ttcaagaaagcatcacgaccgctataccatt |
21169046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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