View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16473_low_9 (Length: 330)
Name: NF16473_low_9
Description: NF16473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16473_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 8457316 - 8457635
Alignment:
| Q |
1 |
tgaacgtgctgtaacatcatctactggtggactggtaacatatatgatacattcaaatatattttcattttattcgaatttgaatcccatgttcctcctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457316 |
tgaacgtgctgtaacatcatctactggtggactggtaacatatatgatacatccaaatatattttcattttattcgaatttgaatcccatgttcctcctg |
8457415 |
T |
|
| Q |
101 |
ttgtatctttgtgttgtttatttcagggtaatcgaaacactggggccattttccacgggtttcccaatatcgaccatactcaagattttgtgagaaagga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457416 |
ttgtatctttgtgttgtttatttcagggtaatcgaaacactggggccattttccacgggtttcccaatatcgaccatactcaagattttgtgagaaagga |
8457515 |
T |
|
| Q |
201 |
tatcataggatggcttcagtggcttcgccataatgtaggctttcaggattttcgttttgattatgcaaaagggtaagatgtgctacactacacctttaga |
300 |
Q |
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| T |
8457516 |
tatcataggatggcttcagtggcttcgccataatgtaggctttcaggattttcgttttgattatgcaaaagggtaagatgtgctacactacacctttaga |
8457615 |
T |
|
| Q |
301 |
atattgagggttttcctttg |
320 |
Q |
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| T |
8457616 |
atattgagggttttcctttg |
8457635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 90 - 288
Target Start/End: Complemental strand, 6827925 - 6827728
Alignment:
| Q |
90 |
tgttcctcctgttgtatctttgtgttgtttatttcagggtaatcgaaacactggggccattttccacgggtttcccaatatcgaccatactcaagatttt |
189 |
Q |
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| T |
6827925 |
tgttcctcttgctgtatctttgcgttgttcatttctggttaatcgaaacactggggccattttccacgggtttcccaatatcgaccacactcaagattgt |
6827826 |
T |
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| Q |
190 |
gtgagaaaggatatcataggatggcttcagtggcttcgccataatgtaggctttcaggattttcgttttgattatgcaaaagggtaagatgtgctacac |
288 |
Q |
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| T |
6827825 |
gtgagaaaggatatcataggatggcttcagtggcttcgccataatgtgggctttcaggattttcgttttgattatgc-aaagggtaagatgtgctacac |
6827728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 90 - 288
Target Start/End: Complemental strand, 27964568 - 27964371
Alignment:
| Q |
90 |
tgttcctcctgttgtatctttgtgttgtttatttcagggtaatcgaaacactggggccattttccacgggtttcccaatatcgaccatactcaagatttt |
189 |
Q |
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|||||||| || | |||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
27964568 |
tgttcctcttgctatatctttgcgttgttcatttcaggttaatcgaaacactggggccattttccacgggtttcccaatatcgaccacactcaagattgt |
27964469 |
T |
|
| Q |
190 |
gtgagaaaggatatcataggatggcttcagtggcttcgccataatgtaggctttcaggattttcgttttgattatgcaaaagggtaagatgtgctacac |
288 |
Q |
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| T |
27964468 |
gtgagaaaggatatcataggatggcttcagtggcttcgccataatgtgggctttcaggattttcgttttgattatgc-aaagggtaagatgtgctacac |
27964371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 129 - 288
Target Start/End: Original strand, 9822258 - 9822416
Alignment:
| Q |
129 |
taatcgaaacactggggccattttccacgggtttcccaatatcgaccatactcaagattttgtgagaaaggatatcataggatggcttcagtggcttcgc |
228 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9822258 |
taatcgaaacactggggccattttccacgggtttccccatatcgaccacactcaagattttgtgagaaaggatatcataggatggcttcagtggctttgc |
9822357 |
T |
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| Q |
229 |
cataatgtaggctttcaggattttcgttttgattatgcaaaagggtaagatgtgctacac |
288 |
Q |
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|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9822358 |
cataatgtgggctttcaggattttcgttttgattatgc-aaagggtaagatgtgctacac |
9822416 |
T |
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