View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16474_high_10 (Length: 276)
Name: NF16474_high_10
Description: NF16474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16474_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 269
Target Start/End: Complemental strand, 6069165 - 6068916
Alignment:
| Q |
20 |
gtttatgtgtggtatgatccattccattgtgacagcattctcaaatttgataaacctgagatttgttttgagttctgtgttacaaacgatatgggggaag |
119 |
Q |
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| T |
6069165 |
gtttatgtgtggtatgatccattccattgtgacagcattctcaaatttgataaacctgagatttgttttgagttctgtgttacaaacgatatgggggaag |
6069066 |
T |
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| Q |
120 |
ttgatggttcaattggtattaaagagtgcggggtacgacttgtaggtgttgaagaattggagagtgttttaccggaattggaattggattcacaaaggaa |
219 |
Q |
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| T |
6069065 |
ttgacggttcaattggtattaaagagtgcggggtacgacttgtaggtgtcgaagacttggagagtgttttactggaattggaattggattcaccaaggaa |
6068966 |
T |
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| Q |
220 |
agaagagttgaagaaggcagttgaattagaatcaggacatagtataatct |
269 |
Q |
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| T |
6068965 |
agaagagttgaagaaggcagttgaattagaatcaggacatagtataatct |
6068916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 266
Target Start/End: Complemental strand, 6193551 - 6193308
Alignment:
| Q |
20 |
gtttatgtgtggtatgatccattccattgtgacagcattctcaaatttgataaacctgagatttgttttgagttctgtgttacaaacgata-tgg--ggg |
116 |
Q |
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| T |
6193551 |
gtttatgtgtggtatgatccattccattgtgacagtattctcaaattttatcaacccgagatttgtttcgagttctatgttacaaacgatactggccggg |
6193452 |
T |
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| Q |
117 |
aagttgatggttcaattggtattaaagagtgcggggtacgacttgtaggtgttgaagaattggagagtgttttaccggaattggaattggattcacaaag |
216 |
Q |
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| T |
6193451 |
aagttgatggttcagttggtattaaagagtgtggggtacgactagtaagtgttcaagaattggagagtgttttgcc------ggaattggattcacaaaa |
6193358 |
T |
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| Q |
217 |
gaaagaagagttgaagaaggcagttgaattagaatcaggacatagtataa |
266 |
Q |
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| T |
6193357 |
gaaagaagagttgaagaaggcggtggaattagaatcaggacgtaggataa |
6193308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 22 - 266
Target Start/End: Original strand, 37453425 - 37453672
Alignment:
| Q |
22 |
ttatgtgtggtatgatccattccattgtgacagcattctcaaatttgataaacctgagatttgttttgagttctgtgttacaaacgatatg---ggggaa |
118 |
Q |
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| T |
37453425 |
ttatgtgtggtatgatccattccattgtgacagcattctcaaattttatcaacctaaaatttgttttgagttctatgttacaaacgatactactggggaa |
37453524 |
T |
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| Q |
119 |
gttgatggttcaattggtattaaagagtgcggggtacgacttgtaggtgttgaagaattggagagtgttttaccggaattggaattggattcacaaagga |
218 |
Q |
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| T |
37453525 |
gttgatagttcaattcatattaaagagtgtggggtacgacaagtaagtgttgcagaattggagactgttttgccggaattggaattggattcgcaaaaga |
37453624 |
T |
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| Q |
219 |
aagaagagttgaagaaggcagttgaattagaatcaggacatagtataa |
266 |
Q |
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| T |
37453625 |
aaaaagatttgaagaaggcagtggaattagaatcaggacgtaggataa |
37453672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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