View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16474_high_5 (Length: 425)
Name: NF16474_high_5
Description: NF16474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16474_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 17 - 411
Target Start/End: Complemental strand, 42250223 - 42249827
Alignment:
| Q |
17 |
tagtacttttatttgaaagtatacgaaacttctttaaatagtttagtcccagtttttgtcttgaaaaatagttaacatcattactattcttttcgtcaac |
116 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
42250223 |
tagtacttttatttgaaagtatacgaaacttcattaaatagtttagtcccagtttttgtcttgaaaaatagttaacatcattactattcttttagtaaac |
42250124 |
T |
|
| Q |
117 |
taa-tgtatttatgtgaagcttccctccccaccnnnnnnnngaggcagttttctccagtttaaacactacttagggtgtcgtatggaagagtagttttgc |
215 |
Q |
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||| ||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42250123 |
taaatgtatctatgagaagcttccctccccaccttttttttgaggcagttttctccagtttaaacactacttagggtgtcgtatggaagagtagttttgc |
42250024 |
T |
|
| Q |
216 |
tagcgctgattaacattgttgttttcggatatactaatcctctcttgttgctaaaaaacttacgtactatgatttaattaaccttaacatcgttttgtca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42250023 |
tagcgctgattaacattgttgttttcggatatactaatcctctcttgttgctcaaaaacttacgtactatgatttaattaaccttaacatcgttttgtca |
42249924 |
T |
|
| Q |
316 |
caatgactacggaatgtgtaatgccttttatttattgga-annnnnnnnggactcatttaattgtaattaacttaatgattttcatcaaaaatcact |
411 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42249923 |
caatgactacggaatgtgtaatgctttttatttattggattttttttttggactcatttaattgtaattaacttaatgattttcatcaaaaatcact |
42249827 |
T |
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