View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16474_high_7 (Length: 385)
Name: NF16474_high_7
Description: NF16474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16474_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 5 - 368
Target Start/End: Complemental strand, 31670884 - 31670521
Alignment:
| Q |
5 |
tgtgtgatattacttgtgttttagatctcaacaatttgagctttaacacgaaaataagtaaggttgatgctttctaattcttataggaactatcttaatt |
104 |
Q |
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| T |
31670884 |
tgtgtgatattacttgtgttttagatctcaacaatttgagctttaacacgaaaataagtaaggttgatgctttctaattcttataggaactatcttaatt |
31670785 |
T |
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| Q |
105 |
cttttttaagcaatatcaacaaagaaatgatttacttaattaatccatgtaaaaatgttttaaatattctacacaccaaacagtaataacagttagatca |
204 |
Q |
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| T |
31670784 |
cttttttaagcaatatcaacaaagaaatgatttacttaattaatccatgtaaaaatgttttaaatattctacacaccaaacagtcataacagttagatca |
31670685 |
T |
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| Q |
205 |
tacaaaacatttgacattaactataaataattacttataaagtaagacaatactttatcaaaatgaaactcatcaaaatatttactaaataatgaatgat |
304 |
Q |
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| T |
31670684 |
tacaaaacatttgacattaactataaataattacttataaagtaagacaatactttatcaaaatgaaactcatcaaaatatttactaaataatgaatgat |
31670585 |
T |
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| Q |
305 |
taaaattttattaaccttgtatcagtctgtagagccacacacaaatttgggtagacgtcattgg |
368 |
Q |
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| T |
31670584 |
taaaattttattaaccttgtatcagttggtagagccacacacaaatttgggtagacgttattgg |
31670521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 29130880 - 29130759
Alignment:
| Q |
13 |
attacttgtgttttagatctcaacaatttgagctttaacacgaaaataagtaaggttgatgctttctaattcttataggaactatcttaattctttttta |
112 |
Q |
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| T |
29130880 |
attacttgtgttttaagtctcaacagtttgagttttaatac--aaataattaaggttgacg-tttgtcatttatatagaaactatcttaatt-tatttta |
29130785 |
T |
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| Q |
113 |
agcaatatcaacaaagaaatgattta |
138 |
Q |
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| T |
29130784 |
agcaattgcaacaaagaaatgattta |
29130759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 142
Target Start/End: Complemental strand, 29121037 - 29120986
Alignment:
| Q |
91 |
gaactatcttaattcttttttaagcaatatcaacaaagaaatgatttactta |
142 |
Q |
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||||| ||||||||| ||||||||||||| |||| |||||||||||||||| |
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| T |
29121037 |
gaactttcttaattcatttttaagcaatagtaacagagaaatgatttactta |
29120986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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