View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16474_low_13 (Length: 230)
Name: NF16474_low_13
Description: NF16474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16474_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 42354858 - 42355053
Alignment:
| Q |
17 |
agtttgtgcaggttatgcctgacatttcaatgattctacaaggattattgtggatatgcaaactacgcattctatagcatctcttctacatagggagaag |
116 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42354858 |
agtttgtgcaggttatgctt-acatttcaatgattctacaaggattattgtggatatgcaaactacgcattctatagcatctcttctacatagggagaag |
42354956 |
T |
|
| Q |
117 |
ccttaggcttcctcgaggctatcaaattttatgttgcacaattctgcaatctcttatctttgagtcgattgtaaaattgtaattgatgttgttaatt |
213 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42354957 |
ccttaggcttccttgaggctatcaaattttatgttgcacaattctgcaatctcttatctttgagtcgattgtaaaattgtaattgatgttgttaatt |
42355053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University