View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16474_low_14 (Length: 227)
Name: NF16474_low_14
Description: NF16474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16474_low_14 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 37833270 - 37833040
Alignment:
| Q |
1 |
ggatggtgttttttgttgtcgtactc----acacaaagctggcagggttcatttctatgtaacatgttctaataggttagcatgtagtgaagtgcacgaa |
96 |
Q |
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| T |
37833270 |
ggatggtgttttttgttgtcgtactcctccacacaaggttggcagggttcatttctatgtaacatgttctaataggttagcatgtagtgaagtgcatgaa |
37833171 |
T |
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| Q |
97 |
ttcgatttccgagtcaatacttctcaagaaatcaacactgcgggagagaacagaagtcgctttcaatacttttaataaataatttaaagaattgttatcc |
196 |
Q |
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| T |
37833170 |
ttcgatttccgagtcaatacttctcaagaaatcaacactgcgggatagaacagaagtcactttcaatacttttaataaataatttaaagaattgttatcc |
37833071 |
T |
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| Q |
197 |
ctggagtatgacttcccacatagtttagatt |
227 |
Q |
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| T |
37833070 |
ctggagtatgacttcccacatagtttagatt |
37833040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 27 - 152
Target Start/End: Complemental strand, 37841759 - 37841634
Alignment:
| Q |
27 |
acacaaagctggcagggttcatttctatgtaacatgttctaataggttagcatgtagtgaagtgcacgaattcgatttccgagtcaatacttctcaagaa |
126 |
Q |
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|||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||| |
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| T |
37841759 |
acacaaggctggaagggttcctttctatgtaacatgttctaataggttagcatgtagtgaagtgcgcgaattcgatttccgagtcaattatactcaagaa |
37841660 |
T |
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| Q |
127 |
atcaacactgcgggagagaacagaag |
152 |
Q |
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| T |
37841659 |
gacaacactgccggtgagaccagaag |
37841634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 1655620 - 1655677
Alignment:
| Q |
48 |
tttctatgtaacatgttctaataggttagcatgtagtgaagtgcacgaattcgatttc |
105 |
Q |
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| T |
1655620 |
tttctatgtaacatgtgccaataggttagcttgcagtgaagtgcgtgaatttgatttc |
1655677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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