View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16474_low_2 (Length: 528)

Name: NF16474_low_2
Description: NF16474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16474_low_2
NF16474_low_2
[»] chr1 (1 HSPs)
chr1 (14-511)||(34055171-34055668)
[»] chr3 (11 HSPs)
chr3 (78-178)||(47381252-47381351)
chr3 (174-361)||(47381702-47381872)
chr3 (82-178)||(47816721-47816816)
chr3 (413-512)||(47382691-47382790)
chr3 (257-344)||(47817261-47817348)
chr3 (96-176)||(45113354-45113434)
chr3 (24-80)||(47381173-47381229)
chr3 (174-238)||(47817195-47817259)
chr3 (18-80)||(47816634-47816694)
chr3 (413-510)||(45115640-45115737)
chr3 (271-368)||(45114470-45114569)
[»] chr8 (3 HSPs)
chr8 (78-176)||(40243962-40244059)
chr8 (205-389)||(40244398-40244582)
chr8 (413-511)||(40245405-40245503)


Alignment Details
Target: chr1 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 14 - 511
Target Start/End: Complemental strand, 34055668 - 34055171
Alignment:
Q  14 gaacgaagacatatatatggttttgcatatgctgaacttgccacaaattccatctcttaagtaaataggagccacaactctaggatgaatacaggaagca 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34055668 gaacgaagacatatatatggttttgcatatgctgaacttgccacaaattccatctcttaagtaaataggagccacaacactaggatgaatacaggaagca 34055569  T
Q  114 cattgaaaaagatccacctttggagaggagattccagccagttaaagtgccaaagccaactgtgaatatgaatgaatcaaaatgtacttcgtatcttgtt 213  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34055568 cattgaaaaagatccacctttggagaggagattccagccagtgaaagtgccaaagccaactgtgaatatgaatgaatcaaaatgtacttcgtatcttgtt 34055469  T
Q  214 gttttctacctgctgtttatcttaagtattttctcgttcataaaataattatgtcttctgcagtgatcaatttttgcctgacaaagctatagatttgaat 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34055468 gttttctacctgctgtttatcttaagtattttctcgttcataaaataattatgtcttctgcagtgatcaatttttgcctgacaaagctatagatttgaat 34055369  T
Q  314 gccgaagctgcttctcgagttcaacttcaacaggcacgtgtattgtttatctaccatctccggaccagcagttcttgtctattgttcatctaccattcta 413  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34055368 gccgaagctggttctcgagttcaacttcaacaggcacatgtattgtttatctaccatctccggaccagcagttcttgtctattgttcatctaccattcta 34055269  T
Q  414 tgatttggcttgacatgagtgaatttatggaacgaagcacagtctccaaactcatcggttcacttcatgcatatgctggttataccaagggtggtcaa 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34055268 tgatttggcttgacatgagtgaatttatggaacgaagcacagtctccaaactcatcggctcacttcatgcatatgctggttataccaagggtggtcaa 34055171  T

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Target: chr3 (Bit Score: 81; Significance: 7e-38; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 78 - 178
Target Start/End: Original strand, 47381252 - 47381351
Alignment:
Q  78 ataggagccacaactctaggatgaatacaggaagcacattgaaaaagatccacctttggagaggagattccagccagttaaagtgccaaagccaactgtg 177  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  47381252 ataggagccacaacactag-atgaatacaggaagcacattgaaaaagatccagctttggagaggagattccagccagttaaagtgccagagccaactgtg 47381350  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 174 - 361
Target Start/End: Original strand, 47381702 - 47381872
Alignment:
Q  174 tgtgaatatgaatgaatcaaaatgtacttcgtatcttgttgttttctacctgctgtttatcttaagtattttctcgttcataaaataattatgtcttctg 273  Q
    ||||||||||||||||||||| |||||   |||||||||||||||| ||||||||||||||||||                  |||||||||||||||||    
T  47381702 tgtgaatatgaatgaatcaaactgtaccctgtatcttgttgttttccacctgctgtttatcttaat-----------------aataattatgtcttctg 47381784  T
Q  274 cagtgatcaatttttgcctgacaaagctatagatttgaatgccgaagctgcttctcgagttcaacttcaacaggcacgtgtattgttt 361  Q
    |||||||| ||||||||||||||||||||||||||||| ||  ||||||| ||| ||||||| ||||||||| ||||  |||||||||    
T  47381785 cagtgatcgatttttgcctgacaaagctatagatttgattgatgaagctggttcccgagttcgacttcaacatgcacaggtattgttt 47381872  T

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Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 82 - 178
Target Start/End: Original strand, 47816721 - 47816816
Alignment:
Q  82 gagccacaactctaggatgaatacaggaagcacattgaaaaagatccacctttggagaggagattccagccagttaaagtgccaaagccaactgtga 178  Q
    |||||||||| |||| ||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||| | ||||||||||||    
T  47816721 gagccacaacactag-atgaatacaggaagcacattgaagaagatccagctttggagaggaaattccagccagttaaagtgctagagccaactgtga 47816816  T

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Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 413 - 512
Target Start/End: Original strand, 47382691 - 47382790
Alignment:
Q  413 atgatttggcttgacatgagtgaatttatggaacgaagcacagtctccaaactcatcggttcacttcatgcatatgctggttataccaagggtggtcaat 512  Q
    |||||| ||||||||||||| ||||||||||||||   |||||||||||||||||||||||||| || || ||||| |||||||||| ||||||||||||    
T  47382691 atgattcggcttgacatgagcgaatttatggaacggcacacagtctccaaactcatcggttcacctcctggatatgttggttataccgagggtggtcaat 47382790  T

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Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 257 - 344
Target Start/End: Original strand, 47817261 - 47817348
Alignment:
Q  257 aataattatgtcttctgcagtgatcaatttttgcctgacaaagctatagatttgaatgccgaagctgcttctcgagttcaacttcaac 344  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||| || |||||||| ||| ||||||| ||||||||    
T  47817261 aataattatgtcttctgcagtggtcgatttttgcctgacaaagctatagatttgattgacgaagctggttcccgagttcgacttcaac 47817348  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 96 - 176
Target Start/End: Original strand, 45113354 - 45113434
Alignment:
Q  96 ggatgaatacaggaagcacattgaaaaagatccacctttggagaggagattccagccagttaaagtgccaaagccaactgt 176  Q
    ||||||||||||||||||||| |||||||| ||| ||||||||||  ||||||||||||||||||| ||| | ||||||||    
T  45113354 ggatgaatacaggaagcacatcgaaaaagacccagctttggagagacgattccagccagttaaagtaccagaaccaactgt 45113434  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 47381173 - 47381229
Alignment:
Q  24 atatatatggttttgcatatgctgaacttgccacaaattccatctcttaagtaaata 80  Q
    |||||||||||| ||||||||||||| ||||||||| || |||||||||||||||||    
T  47381173 atatatatggttgtgcatatgctgaatttgccacaactttcatctcttaagtaaata 47381229  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 47817195 - 47817259
Alignment:
Q  174 tgtgaatatgaatgaatcaaaatgtacttcgtatcttgttgttttctacctgctgtttatcttaa 238  Q
    ||||||||||||||||| ||| |||||   |||||||||||||||| ||||||||||||||||||    
T  47817195 tgtgaatatgaatgaattaaactgtaccctgtatcttgttgttttccacctgctgtttatcttaa 47817259  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 47816634 - 47816694
Alignment:
Q  18 gaagacatatatatggttttgcatatgctgaacttgccacaaattccatctcttaagtaaata 80  Q
    |||||||||||||||| | |  ||||||| | |||||||||| ||||||||||||||||||||    
T  47816634 gaagacatatatatggctgt--atatgctcagcttgccacaacttccatctcttaagtaaata 47816694  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 510
Target Start/End: Original strand, 45115640 - 45115737
Alignment:
Q  413 atgatttggcttgacatgagtgaatttatggaacgaagcacagtctccaaactcatcggttcacttcatgcatatgctggttataccaagggtggtca 510  Q
    |||||| | |||||||||||||| ||||||||| |   ||| ||||||||||| || ||||||| || || ||||| |||||| ||| | ||||||||    
T  45115640 atgattcgtcttgacatgagtgagtttatggaaaggcacactgtctccaaacttattggttcacctcctggatatgttggttacaccgaaggtggtca 45115737  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 368
Target Start/End: Original strand, 45114470 - 45114569
Alignment:
Q  271 ctgcagtgatcaatttttgcctgacaaagctatagatttgaatgccgaagctgcttctcgagttcaacttcaacaggcac--gtgtattgtttatctacc 368  Q
    ||||||||||| ||||||||| |||||||| || ||||||| ||  ||||||| ||| ||||| |  |||||||| ||||  || |||||||| ||||||    
T  45114470 ctgcagtgatcgatttttgcccgacaaagccattgatttgattgatgaagctggttcacgagtccgtcttcaacatgcacaggtatattgtttgtctacc 45114569  T

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Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 78 - 176
Target Start/End: Original strand, 40243962 - 40244059
Alignment:
Q  78 ataggagccacaactctaggatgaatacaggaagcacattgaaaaagatccacctttggagaggagattccagccagttaaagtgccaaagccaactgt 176  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||| ||||||| || |||||||||||| ||||||||||    
T  40243962 ataggagccacaactctag-atgaatataggaagcacattgaaaaagatccagctttggagaggcgattccaacctgttaaagtgccagagccaactgt 40244059  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 205 - 389
Target Start/End: Original strand, 40244398 - 40244582
Alignment:
Q  205 tatcttgttgttttctacctgctgtttatcttaagtattttctcgttcataaaataattatgtcttctgcagtgatcaatttttgcctgacaaagctata 304  Q
    ||||||||| | |||||| |||||||||| | |||| |||||||  |||||||||||||||| ||| ||||| |||| ||||||||||||||||||||||    
T  40244398 tatcttgttatcttctacttgctgtttat-tcaagtgttttctcactcataaaataattatgacttttgcagcgatcgatttttgcctgacaaagctata 40244496  T
Q  305 gatttgaatgccgaagctgcttctcgagttcaacttcaacaggcacgtgtattgtttatctacc-atctccggaccagcagttctt 389  Q
    ||||||| ||  ||||||| ||| ||||| | ||||||||| ||||  |||||||| ||| ||| ||| | | |||||||||||||    
T  40244497 gatttgattgatgaagctggttcccgagtccgacttcaacatgcacaggtattgttcatccaccaatccctgaaccagcagttctt 40244582  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 413 - 511
Target Start/End: Original strand, 40245405 - 40245503
Alignment:
Q  413 atgatttggcttgacatgagtgaatttatggaacgaagcacagtctccaaactcatcggttcacttcatgcatatgctggttataccaagggtggtcaa 511  Q
    |||||| | ||||||||||||||||| |||||| |   |||||||||||||||||| ||||||| ||  | ||||| |||||||||  |||||||||||    
T  40245405 atgattcgtcttgacatgagtgaattcatggaaaggcacacagtctccaaactcattggttcacctccaggatatgttggttatactgagggtggtcaa 40245503  T

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