View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16474_low_3 (Length: 482)
Name: NF16474_low_3
Description: NF16474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16474_low_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 17 - 482
Target Start/End: Original strand, 37832563 - 37833028
Alignment:
| Q |
17 |
aaattctgcaggtccacatcatttagatgaaaactacaagacctacacagagcctgtcaagctaccaaaaagctagatcagcgctaatacacacatccta |
116 |
Q |
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| T |
37832563 |
aaattctgcaggtccacatcatttagatgaaaactacaagacctacacagagcctgtcaagctaccaaaaagctagatcagcgctaatacacacatccta |
37832662 |
T |
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| Q |
117 |
ccataagactcacaaattttccacctgaacccaaacaatacaggcacaattccaaaggactccaatctaaaataaaatgcacaccaaaactcaatgaaac |
216 |
Q |
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| T |
37832663 |
ccataagactcacaaattttccacctgaacccaaacaatacaggcacaattccaaaggactccaatctaaaataaaatgcacaccaaaactcaatgaaac |
37832762 |
T |
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| Q |
217 |
ttaattggagttttcctttgaataaagccactctcaaaaactcaaattctgctaacaacaatcttaaagcatacttataaaaataaacaagcaaaaatct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37832763 |
ttaattggagttttcctttgaataaagccactctcaaaaactcaaattctgctaacaacaatcttaaagcatacttataaaaataaacaagcaaaaatct |
37832862 |
T |
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| Q |
317 |
tatgctaggactagggtgaattattaagcataagaactagctcaatgtcttaaacgaaactaacaacaaaataaatctctagagtaaatttcagtagtat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37832863 |
tatgctaggactagggtgaattattaagcataagaactagctcaatgtcttaaacgaaactaacaacaaaataaatctctagagtaaatttcagtagttt |
37832962 |
T |
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| Q |
417 |
gtcccatttgtcatcgtccctcatgagcaaacaactgcttttacttcttatttgagatttctcatt |
482 |
Q |
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| T |
37832963 |
gtcccatttgtcatcgtccctcatgagcaaacaactgcttttacttcttatttgagatttctcatt |
37833028 |
T |
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