View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16474_low_4 (Length: 468)
Name: NF16474_low_4
Description: NF16474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16474_low_4 |
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| [»] scaffold1192 (2 HSPs) |
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| [»] scaffold0778 (3 HSPs) |
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| [»] scaffold1390 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 432; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 18 - 461
Target Start/End: Complemental strand, 25907057 - 25906614
Alignment:
| Q |
18 |
agctggccactagatctcgctgaaaaacacaacaataaatcatataccgattattctaacatcaaataatacataataaacgatgtagtgcgaaaaacta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25907057 |
agctggccactagatctcgctgaaaaacacaacaataaatcatataccgattattctaacatcaaataatacataataaacgatgtagtgcgaaaaacta |
25906958 |
T |
|
| Q |
118 |
ctctactgatatgttttcaccgttcctaacatcattaaacacactcaaataagataaacattattgctaatctcgtatttaattaccacaagaaacaaaa |
217 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25906957 |
ctctactaatatgttttcaccgttcctaacatcattaaacacactcaaataagataaacattattgctaatctcgtatttaattaccacaagaaacaaaa |
25906858 |
T |
|
| Q |
218 |
cttattgagttacaatctcagtatataaatagggagttttacttaacatattcacataattgctatctacatagcgtagacacttgacttgaagatcata |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25906857 |
cttattgagttacaatctcagtatataaatagggagttttacttaacatattcacataattgctatccacatagcgtagacacttgacttgaagatcata |
25906758 |
T |
|
| Q |
318 |
tcaccgatccaggtgataaatcacataaattcacacaagaacaagatccttattgcatcttttatggatcaatttatcctctcaaatttacaaaacagta |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25906757 |
tcaccgatccaggtgataaatcacataaattcacacaagaacaagatccttattgaatcttttatggatcaatttatcctctcaaatttacaaaacagta |
25906658 |
T |
|
| Q |
418 |
gcacaatagtcttttaaattaaagaatatcaaatagtataatct |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25906657 |
gcacaatagtcttttaaattaaagaatatcaaatagtataatct |
25906614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 305 - 460
Target Start/End: Complemental strand, 25892404 - 25892247
Alignment:
| Q |
305 |
cttgaagatcatatcaccgatccaggtgataaatcacataaattcacacaagaacaagatccttattgcatcttt--tatggatcaatttatcctctcaa |
402 |
Q |
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|||||||| ||||||||| || ||||||||||||| ||||||||||||||||||||||||||||| || |||||| | ||||||||||||||||||||| |
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| T |
25892404 |
cttgaagaacatatcaccaatgcaggtgataaatctcataaattcacacaagaacaagatccttaatgaatctttcttttggatcaatttatcctctcaa |
25892305 |
T |
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| Q |
403 |
atttacaaaacagtagcacaatagtcttttaaattaaagaatatcaaatagtataatc |
460 |
Q |
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|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
25892304 |
atttacaaaacagtagcacattagtctcttaaattaaagaatatcaaatagtataatc |
25892247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 154 - 240
Target Start/End: Complemental strand, 25892869 - 25892783
Alignment:
| Q |
154 |
aaacacactcaaataagataaacattattgctaatctcgtatttaattaccacaagaaacaaaacttattgagttacaatctcagta |
240 |
Q |
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||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||| | ||||||||| |
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| T |
25892869 |
aaacacattcaaataagataaacatcattgcttatctcgtatttaattaccacaagaaacaaaacttatcgagtaatgatctcagta |
25892783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 52 - 221
Target Start/End: Complemental strand, 25911462 - 25911284
Alignment:
| Q |
52 |
ataaatcatataccgattattctaacatcaaataatacataataaacgatgtagtgcgaaaaactactctactgata---------------tgttttca |
136 |
Q |
| |
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||||||||||| |||||||||||| ||||||| ||||| ||||||||||||||||| | |||||||||||| | ||| |||||||| |
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| T |
25911462 |
ataaatcatatgccgattattctatcatcaaacaatacctaataaacgatgtagtgtggaaaactactctattcataacaaatctaaaagtatgttttca |
25911363 |
T |
|
| Q |
137 |
ccgttcctaacatcattaaacacactcaaataagataaacattattgctaatctcgtatttaattaccacaagaaacaaaactta |
221 |
Q |
| |
|
||||||||||| |||| |||||||||| |||||||| |||||| |||| |||||||||||||||||||||||||||||| |
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| T |
25911362 |
acgttcctaaca------aacaaactcaaataaaataaacataattgcttatcttgtatttaattaccacaagaaacaaaactta |
25911284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 25892740 - 25892693
Alignment:
| Q |
240 |
atataaatagggagttttacttaacatattcacataattgctatctac |
287 |
Q |
| |
|
|||||||||| || ||||||||||||| ||||||||||| |||||||| |
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| T |
25892740 |
atataaatagagaattttacttaacatgttcacataatttctatctac |
25892693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 25892979 - 25892926
Alignment:
| Q |
52 |
ataaatcatataccgattattctaacatcaaataatacataataaacgatgtag |
105 |
Q |
| |
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||||||||||| |||||||||| ||||||||| | ||| |||||||||||||| |
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| T |
25892979 |
ataaatcatatgccgattattcaaacatcaaacattactaaataaacgatgtag |
25892926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1192 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: scaffold1192
Description:
Target: scaffold1192; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 52 - 287
Target Start/End: Original strand, 1475 - 1733
Alignment:
| Q |
52 |
ataaatcatataccgattattctaacatcaaataatacataataaacgatgtagtgcgaaaaactactcta---------------------ctgatatg |
130 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||| || |||||||| |
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| T |
1475 |
ataaatcatatgccgattattctaccatcaaataatacataataaatgatgtagtgtgaaaaactactttattcgtaacaaatctaaaagtactgatatg |
1574 |
T |
|
| Q |
131 |
ttttcaccgttcctaacatcattaaacacactcaaataagataaacattattgctaatctcgtatttaattaccacaagaaacaaaacttattgagttac |
230 |
Q |
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|
|||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
1575 |
ttttcaccgttcctaacatcattaaacacagtcaaataagataaacatcattgttaatctcgtatttaattaccccaagaaacaaaacttatcgagttac |
1674 |
T |
|
| Q |
231 |
aatctcagtatata--aatagggagttttacttaacatattcacataattgctatctac |
287 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| | |||||||||||||||| |
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| T |
1675 |
aatctcagtatataataatagggagttttacttaacatatccccataattgctatctac |
1733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1192; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 404 - 460
Target Start/End: Original strand, 1791 - 1847
Alignment:
| Q |
404 |
tttacaaaacagtagcacaatagtcttttaaattaaagaatatcaaatagtataatc |
460 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1791 |
tttacaaaacagtagcacattagtctcttaaattaaagaatatcaaatagtataatc |
1847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0778 (Bit Score: 115; Significance: 3e-58; HSPs: 3)
Name: scaffold0778
Description:
Target: scaffold0778; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 305 - 460
Target Start/End: Complemental strand, 4350 - 4193
Alignment:
| Q |
305 |
cttgaagatcatatcaccgatccaggtgataaatcacataaattcacacaagaacaagatccttattgcatcttt--tatggatcaatttatcctctcaa |
402 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| || | ||||||||||||||||||||| |
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|
| T |
4350 |
cttgaagatattatcaccgatccaggtgataaatctcataaattcacacaagaacaagatccttattgaatcgttcttttggatcaatttatcctctcaa |
4251 |
T |
|
| Q |
403 |
atttacaaaacagtagcacaatagtcttttaaattaaagaatatcaaatagtataatc |
460 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4250 |
atttacaaaacagtagcacattagtctcttaaattaaagaatatcaaatagtataatc |
4193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0778; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 756 - 685
Alignment:
| Q |
156 |
acacactcaaataagataaacattattgctaatctcgtatttaattaccacaagaaacaaaacttattgagt |
227 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
756 |
acacactcaaataagataaacatcattgcttatcttgtatttaattaccacaagaaacaaaacttatcgagt |
685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0778; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 1030 - 961
Alignment:
| Q |
52 |
ataaatcatataccgattattctaacatcaaataatacataataaacgatgtagtgcgaaaaactactct |
121 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| |||| ||||||||||||||||| | ||||||||||| |
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|
| T |
1030 |
ataaatcatatgccgattattccaacatcaaaccatacctaataaacgatgtagtgtggaaaactactct |
961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1390 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold1390
Description:
Target: scaffold1390; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 52 - 122
Target Start/End: Original strand, 1073 - 1143
Alignment:
| Q |
52 |
ataaatcatataccgattattctaacatcaaataatacataataaacgatgtagtgcgaaaaactactcta |
122 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| | |||||||||||| |
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|
| T |
1073 |
ataaatcatatgccgattattctaacatcaaacaatacctaataaacgatgtagtgtggaaaactactcta |
1143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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