View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16474_low_6 (Length: 418)
Name: NF16474_low_6
Description: NF16474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16474_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 52 - 407
Target Start/End: Original strand, 6089995 - 6090375
Alignment:
| Q |
52 |
taactttaaaacataatcttgtatat-----gtgtaaagaaaactgttttccttttttgataattttatcatctcaaagttgattatttcaataattaaa |
146 |
Q |
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| T |
6089995 |
taactttaaaacataatcgtttatattgcatgtgtaaagaaaactgttttccttttttgataattttatcatctcaaagttgattatttcaataattaaa |
6090094 |
T |
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| Q |
147 |
tcgtgacaa--------------------gagataaatcataatcaattaacacatctaatctggaaaggagtactggtaaaaactgctttttatttacc |
226 |
Q |
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| T |
6090095 |
tcgtgacaatttagtaaaacaagtaacaagagataaatcataatcaattaacacatctaatctggaaaggagtaccggtaaaaactgcttttcatttacc |
6090194 |
T |
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| Q |
227 |
ttgaacttgtattgaatgaattgatctattcacagcttctggtggattacttgaagtggatgccatattgttgtgaactccttcattagcagccacagga |
326 |
Q |
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| T |
6090195 |
ttgaacttgtattgaatgaattgatctattcacagcttctggtggattacttgaagtggatgccatattgttgtgaactccttcattaccagccacagga |
6090294 |
T |
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| Q |
327 |
tgataggagcatcgcctaatgtcttctcctactttgctactccggtgcgcttcaatgccaccccgccctaggtctgcttca |
407 |
Q |
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| T |
6090295 |
tgataggagcatcgcctaatgtcttctcctactttgctactccggtgcgcttcaatgccaccccgccctaggtctgcttca |
6090375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 266 - 347
Target Start/End: Original strand, 6209799 - 6209883
Alignment:
| Q |
266 |
tggtggattacttgaagtggatgccatattgttgtgaactccttcattagcagccacaggatgata---ggagcatcgcctaatg |
347 |
Q |
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| T |
6209799 |
tggtggattacttgaagtggatgccatattgttgtgaactccttctttaccagccacaggaggataattggagcatcgcctaatg |
6209883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 259 - 310
Target Start/End: Original strand, 6111232 - 6111283
Alignment:
| Q |
259 |
cagcttctggtggattacttgaagtggatgccatattgttgtgaactccttc |
310 |
Q |
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| T |
6111232 |
cagcttctggtggattacttgaagtggatgccatattgttgtgaactccttc |
6111283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 266 - 312
Target Start/End: Original strand, 6183344 - 6183390
Alignment:
| Q |
266 |
tggtggattacttgaagtggatgccatattgttgtgaactccttcat |
312 |
Q |
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| T |
6183344 |
tggtggattacttgaagtggatgccatgttgttgtaaactccttcat |
6183390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 266 - 312
Target Start/End: Original strand, 6250890 - 6250936
Alignment:
| Q |
266 |
tggtggattacttgaagtggatgccatattgttgtgaactccttcat |
312 |
Q |
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| T |
6250890 |
tggtggattacttgaagtggatgccatgttgttgtaaactccttcat |
6250936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 309
Target Start/End: Original strand, 6102091 - 6102132
Alignment:
| Q |
268 |
gtggattacttgaagtggatgccatattgttgtgaactcctt |
309 |
Q |
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| T |
6102091 |
gtggattagttgaagtggatgccatattgttgcgaagtcctt |
6102132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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